Evidence map›Paper›PMID 20932979›Full record

ArticleJournal of molecular biology2010

Pathogenic mutations in the hydrophobic core of the human prion protein can promote structural instability and misfolding.

Marc W van der Kamp, Valerie Daggett

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 110 citations in OpenAlex.

  1. Article
  2. Review
  3. Multi-eGO: An in silico lens to look into protein aggregation kinetics at atomic resolution.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Characterization of mutations inNeuropsychiatric disease and treatment · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Prion diseases: immunotargets and therapy.ImmunoTargets and therapy · 2016
    Review
  16. Article
  17. Article
  18. Article
  19. Heparin binding confers prion stability and impairs its aggregation.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2014
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Marc W van der KampDepartment of Bioengineering, University of Washington, Seattle, WA 98195-5013, USA.
Valerie Daggett
University of Washington · US

Funding

Characterization of prion protein conformational changesR01GM081407 · NIGMS · UNIVERSITY OF WASHINGTON · PI DAGGETT, VALERIE D · 2007 to 2010
$1.1M
MULTI-TIERED PROTEOMIC COMPUTE CLUSTER: PARKINSON'S DISEASES10RR023044 · NCRR · UNIVERSITY OF WASHINGTON · PI GOODLETT, DAVID ROBINSON · 2006 to 2006
$500k
NCRR NIH HHS 1S10RR023044-01NCRR NIH HHS S10 RR023044NIGMS NIH HHS GM 81407NIGMS NIH HHS R01 GM081407
6 · The paper itself

Abstract

Transmissible spongiform encephalopathies, or prion diseases, are caused by misfolding and aggregation of the prion protein PrP. These diseases can be hereditary in humans and four of the many disease-associated missense mutants of PrP are in the hydrophobic core: V180I, F198S, V203I and V210I. The T183A mutation is related to the hydrophobic core mutants as it is close to the hydrophobic core and known to cause instability. We used extensive molecular dynamics simulations of these five PrP mutants to compare their dynamics and conformations to those of the wild type PrP. The simulations highlight the changes that occur upon introduction of mutations and help to rationalize experimental findings. Changes can occur around the mutation site, but they can also be propagated over long distances. In particular, the F198S and T183A mutations lead to increased flexibility in parts of the structure that are normally stable, and the short β-sheet moves away from the rest of the protein. Mutations V180I, V210I and, to a lesser extent, V203I cause changes similar to those observed upon lowering the pH, which has been linked to misfolding. Early misfolding is observed in one V180I simulation. Overall, mutations in the hydrophobic core have a significant effect on the dynamics and stability of PrP, including the propensity to misfold, which helps to explain their role in the development of familial prion diseases.

Indexed as

Mutation, MissenseHumansModels, MolecularMolecular Dynamics SimulationMutant ProteinsPrionsProtein ConformationProtein FoldingProtein Structure, TertiaryMutant ProteinsPrions

Identifiers

PMID20932979
PMCPMC2994014
OpenAlexW1988075691

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.