ArticleJournal of biomolecular NMR2010
Automated protein resonance assignments of magic angle spinning solid-state NMR spectra of β1 immunoglobulin binding domain of protein G (GB1).
Article in Journal of biomolecular NMR, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- ssPINE: Probabilistic Algorithm for Automated Chemical Shift Assignment of Solid-State NMR Data from Complex Protein Systems.Membranes · 2022Article
- POKY software tools encapsulating assignment strategies for solution and solid-state protein NMR data.Journal of structural biology: X · 2022Article
- Regulation of hepatic glutamine metabolism by miR-122.Molecular metabolism · 2020Article
- Detecting and accounting for multiple sources of positional variance in peak list registration analysis and spin system grouping.Journal of biomolecular NMR · 2017Article
- Analysis of local molecular motions of aromatic sidechains in proteins by 2D and 3D fast MAS NMR spectroscopy and quantum mechanical calculations.Physical chemistry chemical physics : PCCP · 2015Article
- Experimental Protein Structure Verification by Scoring with a Single, Unassigned NMR Spectrum.Structure (London, England : 1993) · 2015Article
- Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.Protein science : a publication of the Protein Society · 2015Review
- On the problem of resonance assignments in solid state NMR of uniformly ¹⁵N,¹³C-labeled proteins.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2015Article
- Rapid proton-detected NMR assignment for proteins with fast magic angle spinning.Journal of the American Chemical Society · 2014Article
- VirtualSpectrum, a tool for simulating peak list for multi-dimensional NMR spectra.Journal of biomolecular NMR · 2014Article
- Automated robust and accurate assignment of protein resonances for solid state NMR.Journal of biomolecular NMR · 2014Article
- Automated solid-state NMR resonance assignment of protein microcrystals and amyloids.Journal of biomolecular NMR · 2013Article
- Improved chemical shift prediction by Rosetta conformational sampling.Journal of biomolecular NMR · 2012Article
- A software framework for analysing solid-state MAS NMR data.Journal of biomolecular NMR · 2011Article
- A general Monte Carlo/simulated annealing algorithm for resonance assignment in NMR of uniformly labeled biopolymers.Journal of biomolecular NMR · 2011Article
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3 authors.
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Abstract
Magic-angle spinning solid-state NMR (MAS SSNMR) represents a fast developing experimental technique with great potential to provide structural and dynamics information for proteins not amenable to other methods. However, few automated analysis tools are currently available for MAS SSNMR. We present a methodology for automating protein resonance assignments of MAS SSNMR spectral data and its application to experimental peak lists of the β1 immunoglobulin binding domain of protein G (GB1) derived from a uniformly ¹³C- and ¹⁵N-labeled sample. This application to the 56 amino acid GB1 produced an overall 84.1% assignment of the N, CO, CA, and CB resonances with no errors using peak lists from NCACX 3D, CANcoCA 3D, and CANCOCX 4D experiments. This proof of concept demonstrates the tractability of this problem.
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