Evidence map›Paper›PMID 20931200›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2010

Recommended nomenclature for five mammalian carboxylesterase gene families: human, mouse, and rat genes and proteins.

Roger S Holmes, Matthew W Wright, Stanley J F Laulederkind, Laura A Cox, Masakiyo Hosokawa, Teruko Imai, Shun Ishibashi, Richard Lehner, Masao Miyazaki, Everett J Perkins and 9 more

Abstract read
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
10.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed, 180 citations in OpenAlex.

  1. Trial
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  15. Carboxylesterase 1d Inactivation Augments Lung Inflammation in Mice.ACS pharmacology & translational science · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 18 institutions in 6 countries.

Roger S HolmesDepartment of Genetics, Southwest Foundation for Biomedical Research, San Antonio, TX 78227-5301, USA. rholmes@sfbrgenetics.org
Matthew W Wright
Stanley J F Laulederkind
Laura A Cox
Masakiyo Hosokawa
Teruko Imai
Shun Ishibashi
Richard Lehner
Masao Miyazaki
Everett J Perkins
Phillip M Potter
Matthew R Redinbo
Jacques Robert
Tetsuo Satoh
Tetsuro Yamashita
Bingfan Yan
Tsuyoshi Yokoi
Rudolf Zechner
Lois J Maltais
Texas Biomedical Research Institute · USChiba Institute of Science · JPChiba University · JPEli Lilly (United States) · USEuropean Bioinformatics Institute · GBInstitut Bergonié · FRIwate University · JPJackson Laboratory · USJichi Medical University · JPKanazawa University · JPKumamoto University · JPMedical College of Wisconsin · USSt. Jude Children's Research Hospital · USTokai University · JPUniversity of Alberta · CAUniversity of Graz · ATUniversity of North Carolina at Chapel Hill · USUniversity of Rhode Island · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
WNV REPLIVAX VACCINE IN NON-HUMAN PRIMATESP51RR013986 · NCRR · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI GAUDUIN, MARIE-CLAIRE ELISABETH · 1999 to 2011
$79.1M
SOFTWARE AND DATABASE SYSTEM DEVELOPMENTP41HG000330 · NHGRI · JACKSON LABORATORY · PI EPPIG, JANAN T. · 1995 to 2010
$72.1M
VETERINARY SERVICES--COREP01HL028972 · NHLBI · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI VANDEBERG, JOHN L · 1985 to 2012
$42.0M
Improving CPT-11 Efficacy Using Structural BiologyR01CA098468 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI REDINBO, MATTHEW R · 2003 to 2018
$3.9M
The Nomenclature of Human GenesP41HG003345 · NHGRI · UNIVERSITY COLLEGE LONDON · PI BIRNEY, EWAN · 2004 to 2012
$3.4M
Novel Protein-Based Therapeutics for Nerve Agent DetoxificationU01NS058089 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI REDINBO, MATTHEW R · 2006 to 2010
$2.5M
Selective Inhibitors to Improve CPT-11 TherapyR01CA108775 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI POTTER, PHILIP M · 2005 to 2013
$2.3M
Molecular Toxicology of CarboxylesterasesR01ES007965 · NIEHS · UNIVERSITY OF RHODE ISLAND · PI YAN, BINGFANG · 2003 to 2006
$1.2M
NCI NIH HHS CA108775NCI NIH HHS CA21765NCI NIH HHS CA98468NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA098468NCI NIH HHS R01 CA108775NCRR NIH HHS P51 RR013986NHGRI NIH HHS P41 HG000330NHGRI NIH HHS P41 HG003345NHLBI NIH HHS P01 HL028972NIEHS NIH HHS R01 ES007965NIEHS NIH HHS R01 ES07965NINDS NIH HHS NS58089NINDS NIH HHS U01 NS058089
6 · The paper itself

Abstract

Mammalian carboxylesterase (CES or Ces) genes encode enzymes that participate in xenobiotic, drug, and lipid metabolism in the body and are members of at least five gene families. Tandem duplications have added more genes for some families, particularly for mouse and rat genomes, which has caused confusion in naming rodent Ces genes. This article describes a new nomenclature system for human, mouse, and rat carboxylesterase genes that identifies homolog gene families and allocates a unique name for each gene. The guidelines of human, mouse, and rat gene nomenclature committees were followed and "CES" (human) and "Ces" (mouse and rat) root symbols were used followed by the family number (e.g., human CES1). Where multiple genes were identified for a family or where a clash occurred with an existing gene name, a letter was added (e.g., human CES4A; mouse and rat Ces1a) that reflected gene relatedness among rodent species (e.g., mouse and rat Ces1a). Pseudogenes were named by adding "P" and a number to the human gene name (e.g., human CES1P1) or by using a new letter followed by ps for mouse and rat Ces pseudogenes (e.g., Ces2d-ps). Gene transcript isoforms were named by adding the GenBank accession ID to the gene symbol (e.g., human CES1_AB119995 or mouse Ces1e_BC019208). This nomenclature improves our understanding of human, mouse, and rat CES/Ces gene families and facilitates research into the structure, function, and evolution of these gene families. It also serves as a model for naming CES genes from other mammalian species.

Indexed as

GenesPseudogenesTerminology as TopicAmino Acid SequenceAnimalsCarboxylesteraseHumansMiceMultigene FamilyProtein IsoformsRatsSequence HomologyCarboxylesteraseProtein Isoforms

Identifiers

PMID20931200
PMCPMC3127206
OpenAlexW2155842706

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.