Evidence map›Paper›PMID 20930849›Full record

ArticleEMBO reports2010

Cyclin-dependent kinase 9-cyclin K functions in the replication stress response.

David S Yu, Runxiang Zhao, Emory L Hsu, Jennifer Cayer, Fei Ye, Yan Guo, Yu Shyr, David Cortez

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 111 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Cyclin-dependent kinases: Masters of the eukaryotic universe.Wiley interdisciplinary reviews. RNA · 2023
    Review
  8. Article
  9. Review
  10. Review
  11. Review
  12. The prognostic role of p53 and its correlation with CDK9 in urothelial carcinoma.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Article
  13. Predictive modeling of moonlighting DNA-binding proteins.NAR genomics and bioinformatics · 2022
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

David S YuDepartment of Radiation Oncology, Vanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Runxiang Zhao
Emory L Hsu
Jennifer Cayer
Fei Ye
Yan Guo
Yu Shyr
David Cortez
Vanderbilt University Medical Center · US

Funding

Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
Function of the ATR-ATRIP ComplexR01CA102729 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2003 to 2018
$4.2M
Functional Analysis of Replication Stress Response ProteinsR01CA136933 · NCI · VANDERBILT UNIVERSITY · PI CORTEZ, DAVID K · 2009 to 2013
$1.6M
Role of CDK9 in the Replication Stress ResponseK08CA143902 · NCI · VANDERBILT UNIVERSITY · PI YU, DAVID SUNG-WEN · 2010 to 2014
$823k
NCI NIH HHS K08 CA143902NCI NIH HHS R01 CA102729NCI NIH HHS R01 CA136933NCI NIH HHS R01CA136933NIEHS NIH HHS P30 ES000267NIEHS NIH HHS P30ES000267PHS HHS UL1 024975
6 · The paper itself

Abstract

Cyclin-dependent kinase 9 (CDK9) is a well-characterized subunit of the positive transcription elongation factor b complex in which it regulates transcription elongation in cooperation with cyclin T. However, CDK9 also forms a complex with cyclin K, the function of which is less clear. Using a synthetic lethal RNA interference screen in human cells, we identified CDK9 as a component of the replication stress response. Loss of CDK9 activity causes an increase in spontaneous levels of DNA damage signalling in replicating cells and a decreased ability to recover from a transient replication arrest. This activity is restricted to CDK9-cyclin K complexes and is independent of CDK9-cyclin T complex. CDK9 accumulates on chromatin in response to replication stress and limits the amount of single-stranded DNA in cells under stress. Furthermore, we show that CDK9 and cyclin K interact with ataxia telangiectasia and Rad3-related protein and other checkpoint signalling proteins. These results reveal an unexpectedly direct role for CDK9-cyclin K in checkpoint pathways that maintain genome integrity in response to replication stress.

Indexed as

DNA ReplicationStress, PhysiologicalCell CycleCell Line, TumorChromatinCyclin-Dependent Kinase 9CyclinsDNAGene SilencingHumansHydroxyureaProtein BindingReplication Protein ACCNK protein, humanCDK9 protein, humanChromatinCyclin-Dependent Kinase 9CyclinsDNAHydroxyureaReplication Protein A

Identifiers

PMID20930849
PMCPMC2966956
OpenAlexW2148024463

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.