ArticleNucleic acids research2011
BSDB: the biomolecule stretching database.
Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.
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Who cites it
16 citing papers in PubMed.
- GenUnfold: Rapidly Predict Protein Mechanical Unfolding Trajectory via a Physics-Guided Diffusion Model.Proceedings of machine learning research · 2026Article
- MechanoProDB: a web-based database for exploring the mechanical properties of proteins.Database : the journal of biological databases and curation · 2024Article
- ForceGen: End-to-end de novo protein generation based on nonlinear mechanical unfolding responses using a language diffusion model.Science advances · 2024Article
- Optically induced electrothermal microfluidic tweezers in bio-relevant media.Scientific reports · 2023Article
- The mechanical cell - the role of force dependencies in synchronising protein interaction networks.Journal of cell science · 2022Review
- Protein folding mechanism revealed by single-molecule force spectroscopy experiments.Biophysics reports · 2021Article
- Differentiating between Inactive and Active States of Rhodopsin by Atomic Force Microscopy in Native Membranes.Analytical chemistry · 2019Article
- Mechanical and thermodynamic properties of AβBeilstein journal of nanotechnology · 2019Article
- Unusually high mechanical stability of bacterial adhesin extender domains having calcium clamps.PloS one · 2017Article
- Mechanical stability of bivalent transition metal complexes analyzed by single-molecule force spectroscopy.Beilstein journal of organic chemistry · 2015Article
- Inducible nitric oxide synthase drives mTOR pathway activation and proliferation of human melanoma by reversible nitrosylation of TSC2.Cancer research · 2014Article
- Mechanical resistance in unstructured proteins.Biophysical journal · 2013Article
- Formation of cystine slipknots in dimeric proteins.PloS one · 2013Article
- Bioinformatics and computational biology in Poland.PLoS computational biology · 2013Article
- Engineering proteins with enhanced mechanical stability by force-specific sequence motifs.Proteins · 2012Article
- The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection.Nucleic acids research · 2011Article
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Authors and funding
4 authors.
Funding
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Abstract
We describe the Biomolecule Stretching Data Base that has been recently set up at http://www.ifpan.edu.pl/BSDB/. It provides information about mechanostability of proteins. Its core is based on simulations of stretching of 17 134 proteins within a structure-based model. The primary information is about the heights of the maximal force peaks, the force-displacement patterns, and the sequencing of the contact-rupturing events. We also summarize the possible types of the mechanical clamps, i.e. the motifs which are responsible for a protein's resistance to stretching.
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