Evidence map›Paper›PMID 20929866›Full record

ArticleThe Journal of biological chemistry2010

Separate and combined biochemical activities of the subunits of a naturally split reverse gyrase.

Christopher Capp, Yushen Qian, Harvey Sage, Harald Huber, Tao-Shih Hsieh

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Archaea: A Gold Mine for Topoisomerase Diversity.Frontiers in microbiology · 2021
    Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Synthesis and dissolution of hemicatenanes by type IA DNA topoisomerases.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Christopher CappDepartment of Biochemistry, Duke University, Medical Center, Durham, North Carolina 27710, USA.
Yushen Qian
Harvey Sage
Harald Huber
Tao-Shih Hsieh
Duke University · USDuke University Hospital · USUniversity of Regensburg · DE

Funding

FUNCTION AND MECHANISM OF DNA TOPOISOMERASER01GM029006 · NIGMS · DUKE UNIVERSITY · PI HSIEH, TAO-SHIH · 1985 to 2010
$5.5M
NIGMS NIH HHS GM29006NIGMS NIH HHS R01 GM029006
6 · The paper itself

Abstract

Reverse gyrase reanneals denatured DNA and induces positive supercoils in DNA, an activity that is critical for life at very high temperatures. Positive supercoiling occurs by a poorly understood mechanism involving the coordination of a topoisomerase domain and a helicase-like domain. In the parasitic archaeon Nanoarchaeum equitans, these domains occur as separate subunits. We express the subunits, and characterize them both in isolation and as a heterodimer. Each subunit tightly associates and interacts with the other. The topoisomerase subunit enhances the catalytic specificity of the DNA-dependent ATPase activity of the helicase-like subunit, and the helicase-like subunit inhibits the relaxation activity of the topoisomerase subunit while promoting positive supercoiling. DNA binding preference for both single- and double-stranded DNA is partitioned between the subunits. Based on a sensitive topological shift assay, the binding preference of helicase-like subunit for underwound DNA is modulated by its binding with ATP cofactor. These results provide new insight into the mechanism of positive supercoil induction by reverse gyrase.

Indexed as

Adenosine TriphosphateArchaeal ProteinsCatalytic DomainDNA, ArchaealDNA, SuperhelicalDNA Topoisomerases, Type INanoarchaeotaProtein MultimerizationAdenosine TriphosphateArchaeal ProteinsDNA, ArchaealDNA reverse gyraseDNA, SuperhelicalDNA Topoisomerases, Type I

Identifiers

PMID20929866
PMCPMC3000944
OpenAlexW2083583008

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.