Evidence map›Paper›PMID 20926389›Full record

ArticleThe Journal of biological chemistry2010

Genomics-driven reconstruction of acinetobacter NAD metabolism: insights for antibacterial target selection.

Leonardo Sorci, Ian Blaby, Jessica De Ingeniis, Svetlana Gerdes, Nadia Raffaelli, Valérie de Crécy Lagard, Andrei Osterman

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 46 citations in OpenAlex.

  1. Regulation of NADPathogens (Basel, Switzerland) · 2025
    Article
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  6. Engineering nonphotosynthetic carbon fixation for production of bioplastics by methanogenic archaea.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Effect of Divalent Metal Ion on the Structure, Stability and Function ofInternational journal of molecular sciences · 2021
    Article
  8. Article
  9. Article
  10. Toward a structome of Acinetobacter baumannii drug targets.Protein science : a publication of the Protein Society · 2020
    Article
  11. Review
  12. Article
  13. Identification of evolutionary and kinetic drivers of NAD-dependent signaling.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  14. Article
  15. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Leonardo SorciSanford-Burnham Medical Research Institute, La Jolla, California 92037, USA.
Ian Blaby
Jessica De Ingeniis
Svetlana Gerdes
Nadia Raffaelli
Valérie de Crécy Lagard
Andrei Osterman
Sanford Burnham Prebys Medical Discovery Institute · USUniversity of Florida · USDirectorate-General for Interpretation · BEMarche Polytechnic University · IT

Funding

Genomics of Coenzyme Metabolism in Bacterial PathogensR01AI066244 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI OSTERMAN, ANDREI L · 2007 to 2010
$1.6M
NIAID NIH HHS R01 AI066244
6 · The paper itself

Abstract

Enzymes involved in the last steps of NAD biogenesis, nicotinate mononucleotide adenylyltransferase (NadD) and NAD synthetase (NadE), are conserved and essential in most bacterial species and are established targets for antibacterial drug development. Our genomics-based reconstruction of NAD metabolism in the emerging pathogen Acinetobacter baumannii revealed unique features suggesting an alternative targeting strategy. Indeed, genomes of all analyzed Acinetobacter species do not encode NadD, which is functionally replaced by its distant homolog NadM. We combined bioinformatics with genetic and biochemical techniques to elucidate this and other important features of Acinetobacter NAD metabolism using a model (nonpathogenic) strain Acinetobacter baylyi sp. ADP1. Thus, a comparative kinetic characterization of PncA, PncB, and NadV enzymes allowed us to suggest distinct physiological roles for the two alternative, deamidating and nondeamidating, routes of nicotinamide salvage/recycling. The role of the NiaP transporter in both nicotinate and nicotinamide salvage was confirmed. The nondeamidating route was shown to be transcriptionally regulated by an ADP-ribose-responsive repressor NrtR. The NadM enzyme was shown to possess dual substrate specificity toward both nicotinate and nicotinamide mononucleotide substrates, which is consistent with its essential role in all three routes of NAD biogenesis, de novo synthesis as well as the two salvage pathways. The experimentally confirmed unconditional essentiality of nadM provided support for the choice of the respective enzyme as a drug target. In contrast, nadE, encoding a glutamine-dependent NAD synthetase, proved to be dispensable when the nondeamidating salvage pathway functioned as the only route of NAD biogenesis.

Indexed as

GenomicsAcinetobacter baumanniiAnti-Bacterial AgentsCloning, MolecularComputational BiologyEscherichia coliHumansKineticsModels, ChemicalModels, GeneticMutationNADNicotinamide-Nucleotide AdenylyltransferasePhenotypeReverse Transcriptase Polymerase Chain ReactionAnti-Bacterial AgentsNADNicotinamide-Nucleotide Adenylyltransferasenicotinic acid mononucleotide adenylyltransferase

Identifiers

PMID20926389
PMCPMC2998121
OpenAlexW2076184445

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.