Evidence map›Paper›PMID 20924598›Full record

ArticlePflugers Archiv : European journal of physiology2011

Physicochemical properties of pore residues predict activation gating of Ca V1.2: a correlation mutation analysis.

Stanislav Beyl, Katrin Depil, Annette Hohaus, Anna Stary-Weinzinger, Eugen Timin, Waheed Shabbir, Michaela Kudrnac, Steffen Hering

Open access · hybridAbstract read
In one paragraph

Article in Pflugers Archiv : European journal of physiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. A Novel De Novo Gain-of-FunctionNeurology. Genetics · 2024
    Article
  2. Article
  3. Calcium channel gating.Pflugers Archiv : European journal of physiology · 2018
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Stanislav BeylInstitute for Pharmacology and Toxicology, University of Vienna, Althanstrasse 14, Vienna, Austria.
Katrin Depil
Annette Hohaus
Anna Stary-Weinzinger
Eugen Timin
Waheed Shabbir
Michaela Kudrnac
Steffen Hering
University of Vienna · AT

Funding

Austrian Science Fund FWF P 19614Austrian Science Fund FWF P 22600
6 · The paper itself

Abstract

Single point mutations in pore-forming S6 segments of calcium channels may transform a high-voltage-activated into a low-voltage-activated channel, and resulting disturbances in calcium entry may cause channelopathies (Hemara-Wahanui et al., Proc Natl Acad Sci U S A 102(21):7553-7558, 16). Here we ask the question how physicochemical properties of amino acid residues in gating-sensitive positions on S6 segments determine the threshold of channel activation of Ca(V)1.2. Leucine in segment IS6 (L434) and a newly identified activation determinant in segment IIIS6 (G1193) were mutated to a variety of amino acids. The induced leftward shifts of the activation curves and decelerated current activation and deactivation suggest a destabilization of the closed and a stabilisation of the open channel state by most mutations. A selection of 17 physicochemical parameters (descriptors) was calculated for these residues and examined for correlation with the shifts of the midpoints of the activation curve (ΔV (act)). ΔV (act) correlated with local side-chain flexibility in position L434 (IS6), with the polar accessible surface area of the side chain in position G1193 (IIIS6) and with hydrophobicity in position I781 (IIS6). Combined descriptor analysis for positions I781 and G1193 revealed that additional amino acid properties may contribute to conformational changes during the gating process. The identified physicochemical properties in the analysed gating-sensitive positions (accessible surface area, side-chain flexibility, and hydrophobicity) predict the shifts of the activation curves of Ca(V)1.2.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionCalcium Channels, L-TypeCells, CulturedDNA Mutational AnalysisHumansHydrophobic and Hydrophilic InteractionsIon Channel GatingThermodynamicsCalcium Channels, L-TypeL-type calcium channel alpha(1C)

Identifiers

PMID20924598
PMCPMC3016219
OpenAlexW2067202420

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.