Evidence map›Paper›PMID 20923660›Full record

ArticleBiophysical journal2010

Consistent picture of the reversible thermal unfolding of hen egg-white lysozyme from experiment and molecular dynamics.

Filip Meersman, Canan Atilgan, Andrew J Miles, Reto Bader, Weifeng Shang, André Matagne, B A Wallace, Michel H J Koch

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Non-covalent Encapsulation of siRNA with Cell-Penetrating Peptides.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  6. Article
  7. Unfolding Pathways of Hen Egg-White Lysozyme in Ethanol.The journal of physical chemistry. B · 2019
    Article
  8. Article
  9. Article
  10. Milling solid proteins to enhance activity after melt-encapsulation.International journal of pharmaceutics · 2017
    Article
  11. Critical structural fluctuations of proteins upon thermal unfolding challenge the Lindemann criterion.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  12. Article
  13. Article
  14. Effects of pressure on the dynamics of an oligomeric protein from deep-sea hyperthermophile.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 4 countries.

Filip MeersmanDepartment of Chemistry, Katholieke Universiteit Leuven, Leuven, Belgium. Filip.Meersman@chem.kuleuven.be
Canan Atilgan
Andrew J Miles
Reto Bader
Weifeng Shang
André Matagne
B A Wallace
Michel H J Koch
European Molecular Biology Laboratory · DEInstitute of Structural and Molecular Biology · GBKU Leuven · BESabancı Üniversitesi · TRUniversity of Liège · BEUniversity of Regensburg · DE

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

Synchrotron radiation circular dichroism, Fourier transform infrared, and nuclear magnetic resonance spectroscopies, and small-angle x-ray scattering were used to monitor the reversible thermal unfolding of hen egg white lysozyme. The results were compared with crystal structures and high- and low-temperature structures derived from molecular-dynamics calculations. The results of both experimental and computational methods indicate that the unfolding process starts with the loss of β-structures followed by the reversible loss of helix content from ∼40% at 20°C to 27% at 70°C and ∼20% at 77°C, beyond which unfolding becomes irreversible. Concomitantly there is a reversible increase in the radius of gyration of the protein from 15 Å to 18 Å. The reversible decrease in forward x-ray scattering demonstrates a lack of aggregation upon unfolding, suggesting the change is due to a larger dilation of hydration water than of bulk water. Molecular-dynamics simulations suggest a similar sequence of events and are in good agreement with the (1)H(N) chemical shift differences in nuclear magnetic resonance. This study demonstrates the power of complementary methods for elucidating unfolding/refolding processes and the nature of both the unfolded structure, for which there is no crystallographic data, and the partially unfolded forms of the protein that can lead to fibril formation and disease.

Indexed as

Molecular Dynamics SimulationProtein UnfoldingTemperatureAnimalsChickensCircular DichroismMagnetic Resonance SpectroscopyMuramidaseProtein DenaturationProtein Structure, SecondaryScattering, Small AngleSpectrophotometry, InfraredSpectrophotometry, UltravioletSpectroscopy, Fourier Transform InfraredSynchrotronsX-Ray Diffractionhen egg lysozymeMuramidase

Identifiers

PMID20923660
PMCPMC3042584
OpenAlexW1996595913

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.