ArticleMolecular genetics and genomics : MGG2010
Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato.
Article in Molecular genetics and genomics : MGG, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.
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95 citing papers in PubMed, 245 citations in OpenAlex.
- Genome-Wide Identification and Comprehensive Analysis ofLife (Basel, Switzerland) · 2025Article
- Genome-wide identification of lipid transfer proteins in Sorghum bicolor and discovery of flower-specific promoters.Scientific reports · 2025Article
- Isolation of the AP2/ERF transcription factor CaERF14 in pepper and functional characterization under salinity and dehydration stress.Scientific reports · 2025Article
- DNA Methylation Is Crucial for 1-Methylcyclopropene Delaying Postharvest Ripening and Senescence of Tomato Fruit.International journal of molecular sciences · 2024Article
- Alleviation of drought stress in tomato by foliar application of seafood waste extract.Scientific reports · 2024Article
- Transcriptional regulation of tomato fruit ripening.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024Review
- Bioinformatic Assessment and Expression Profiles of theInternational journal of molecular sciences · 2023Article
- ETHYLENE-INSENSITIVE 3-LIKE 2 regulates β-carotene and ascorbic acid accumulation in tomatoes during ripening.Plant physiology · 2023Article
- BABA-induced pathogen resistance: a multi-omics analysis of the tomato response reveals a hyper-receptive status involving ethylene.Horticulture research · 2023Article
- Overexpression ofInternational journal of molecular sciences · 2023Article
- Comparative and expression analyses of AP2/ERF genes reveal copy number expansion and potential functions of ERF genes in Solanaceae.BMC plant biology · 2023Article
- Transcriptomics reveals the molecular mechanisms of flesh colour differences in eggplant (Solanum melongena).BMC plant biology · 2023Article
- Ethylene response factor ERF.D7 activates auxin response factor 2 paralogs to regulate tomato fruit ripening.Plant physiology · 2022Article
- Molecular Events of Rice AP2/ERF Transcription Factors.International journal of molecular sciences · 2022Review
- Conjunctive Analyses of BSA-Seq and BSR-Seq Unveil theInternational journal of molecular sciences · 2022Article
- Genome-wide characterization and identification of candidate ERF genes involved in various abiotic stress responses in sesame (Sesamum indicum L.).BMC plant biology · 2022Article
- Genome-wide characterization and expression analysis of Erf gene family in cotton.BMC plant biology · 2022Article
- Transcriptomic Identification of Wheat AP2/ERF Transcription Factors and Functional Characterization ofInternational journal of molecular sciences · 2022Article
- Genome-wide identification and expression profiling analysis of maize AP2/ERF superfamily genes reveal essential roles in abiotic stress tolerance.BMC genomics · 2022Article
- Genome-Wide Identification of theFrontiers in plant science · 2022Article
35 more citing papers are in PubMed but not listed here.
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Authors and funding
6 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Ethylene responsive transcription factors have been shown to be intimately connected to plant development, defense responses and stress signaling pathways and in order to use them for plant improvement, we need to have better understanding of these proteins. In this study, 85 ERF genes have been identified from tomato using raw EST data in various public repositories. Phylogenetic analysis with tomato ERF domains revealed their distribution in all the groups, previously identified in model systems. MEME motif analysis resulted in identification of conserved domains, characteristic to member of each clade, in addition to ERF domain. Expression analysis during vegetative and reproductive stages of development using QPCR and tomato GeneChip arrays, revealed their tissue-specific/preferential accumulation. In total, 57 genes were found to be differentially expressed during temporal stages of tomato fruit development. The expression analysis of 23 ERF family genes representing each clade in response to seven abiotic stress treatments revealed their differential expression in response to more than one abiotic stress treatments. Results suggest that ERF genes play diverse roles in plant's life and comprehensive data generated will be helpful in conducting functional genomics studies to understand their precise role during plant development and stress response.
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