ArticleGenome biology2010
Multi-species integrative biclustering.
Article in Genome biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Comparing Host Module Activation Patterns and Temporal Dynamics in Infection by Influenza H1N1 Viruses.Frontiers in immunology · 2021Article
- High-Throughput Screen for Cell Wall Synthesis Network Module inFrontiers in bioengineering and biotechnology · 2020Article
- BINDER: computationally inferring a gene regulatory network for Mycobacterium abscessus.BMC bioinformatics · 2019Article
- It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data.Briefings in bioinformatics · 2019Review
- Multi-study inference of regulatory networks for more accurate models of gene regulation.PLoS computational biology · 2019Article
- A Hierarchical Framework for State-Space Matrix Inference and Clustering.The annals of applied statistics · 2016Article
- Reconstruction and Analysis of the Evolution of Modular Transcriptional Regulatory Programs Using Arboretum.Methods in molecular biology (Clifton, N.J.) · 2016Article
- An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.Molecular systems biology · 2015Article
- A hierarchical Bayesian model for flexible module discovery in three-way time-series data.Bioinformatics (Oxford, England) · 2015Article
- Inter-species pathway perturbation prediction via data-driven detection of functional homology.Bioinformatics (Oxford, England) · 2015Article
- Integrative approaches for finding modular structure in biological networks.Nature reviews. Genetics · 2013Review
- Arboretum: reconstruction and analysis of the evolutionary history of condition-specific transcriptional modules.Genome research · 2013Article
- Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.Bioinformatics (Oxford, England) · 2012Article
- Reverse engineering systems models of regulation: discovery, prediction and mechanisms.Current opinion in biotechnology · 2012Review
- A novel biclustering approach with iterative optimization to analyze gene expression data.Advances and applications in bioinformatics and chemistry : AABC · 2012Article
- Integrated inference and analysis of regulatory networks from multi-level measurements.Methods in cell biology · 2012Review
- QServer: a biclustering server for prediction and assessment of co-expressed gene clusters.PloS one · 2012Article
- Comparative microbial modules resource: generation and visualization of multi-species biclusters.PLoS computational biology · 2011Article
- Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees.BMC genomics · 2011Article
Corrections and comments
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Authors and funding
7 authors.
Funding
Abstract
We describe an algorithm, multi-species cMonkey, for the simultaneous biclustering of heterogeneous multiple-species data collections and apply the algorithm to a group of bacteria containing Bacillus subtilis, Bacillus anthracis, and Listeria monocytogenes. The algorithm reveals evolutionary insights into the surprisingly high degree of conservation of regulatory modules across these three species and allows data and insights from well-studied organisms to complement the analysis of related but less well studied organisms.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.