Evidence map›Paper›PMID 20889795›Full record

ArticleApplied and environmental microbiology2010

Selectivity of fungal sesquiterpene synthases: role of the active site's H-1 alpha loop in catalysis.

Fernando López-Gallego, Grayson T Wawrzyn, Claudia Schmidt-Dannert

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  9. Impact ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Biosynthesis of Sesquiterpenes in Basidiomycetes: A Review.Journal of fungi (Basel, Switzerland) · 2022
    Review
  14. Article
  15. New Trends and Future Opportunities in the Enzymatic Formation of C-C, C-N, and C-O bonds.Chembiochem : a European journal of chemical biology · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. RNA-Seq de Novo Assembly and Differential Transcriptome Analysis of Chaga (International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Fernando López-GallegoDepartment of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, 1479 Gortner Avenue, St. Paul, MN 55108, USA.
Grayson T Wawrzyn
Claudia Schmidt-Dannert
University of Minnesota · US

Funding

Biosynthesis of cytotoxic sesquiterpenoids by higher basidiomycetesR01GM080299 · NIGMS · UNIVERSITY OF MINNESOTA · PI SCHMIDT-DANNERT, CLAUDIA · 2008 to 2011
$1.1M
NIGMS NIH HHS GM080299NIGMS NIH HHS R01 GM080299
6 · The paper itself

Abstract

Sesquiterpene synthases are responsible for the cyclization of farnesyl pyrophosphate into a myriad of structurally diverse compounds with various biological activities. We examine here the role of the conserved active site H-α1 loop in catalysis in three previously characterized fungal sesquiterpene synthases. The H-α1 loops of Cop3, Cop4, and Cop6 from Coprinus cinereus were altered by site-directed mutagenesis and the resultant product profiles were analyzed by gas chromatography-mass spectrometry and compared to the wild-type enzymes. In addition, we examine the effect of swapping the H-α1 loop from the promiscuous enzyme Cop4 with the more selective Cop6 and the effect of acidic or basic conditions on loop mutations in Cop4. Directed mutations of the H-α1 loop had a marked effect on the product profile of Cop3 and Cop4, while little to no change was shown in Cop6. Swapping of the Cop4 and Cop6 loops with one another was again shown to influence the product profile of Cop4, while the product profile of Cop6 remained identical to the wild-type enzyme. The loop mutations in Cop4 also implicate specific residues responsible for the pH sensitivity of the enzyme. These results affirm the role of the H-α1 loop in catalysis and provide a potential target to increase the product diversity of terpene synthases.

Indexed as

Alkyl and Aryl TransferasesAmino Acid SubstitutionCatalytic DomainCoprinusFungal ProteinsGas Chromatography-Mass SpectrometryModels, MolecularMutagenesis, Site-DirectedMutant ProteinsProtein Structure, TertiaryRecombinant ProteinsRecombination, GeneticSesquiterpenesSubstrate SpecificityAlkyl and Aryl TransferasesFungal ProteinsMutant ProteinsRecombinant ProteinsSesquiterpenesterpene synthase

Identifiers

PMID20889795
PMCPMC2988597
OpenAlexW2153086807

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.