Evidence map›Paper›PMID 20889748›Full record

ArticleJournal of bacteriology2010

HU protein affects transcription of surface polysaccharide synthesis genes in Porphyromonas gingivalis.

Christine Alberti-Segui, Annette Arndt, Carla Cugini, Richa Priyadarshini, Mary E Davey

Abstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
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  9. The Role of Exopolysaccharides in Oral Biofilms.Journal of dental research · 2019
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  12. Acetylome ofFrontiers in molecular biosciences · 2017
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  13. Genes Contributing toFrontiers in cellular and infection microbiology · 2017
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  14. Synthesis of Sphingolipids Impacts Survival ofFrontiers in microbiology · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Christine Alberti-SeguiDepartment of Molecular Genetics, The Forsyth Institute, Boston, Massachusetts 02115, USA.
Annette Arndt
Carla Cugini
Richa Priyadarshini
Mary E Davey
Harvard University · US

Funding

Regulatory Mechanisms Controlling Expression of P. gingivalis Surface StructuresR01DE019117 · NIDCR · UNIVERSITY OF FLORIDA · PI DAVEY, MARY ELLEN · 2009 to 2019
$4.5M
Biofilm Formation in P. gingivalis: A Role for Capsule ExpressionR21DE017168 · NIDCR · ADA FORSYTH INSTITUTE, INC. · PI DAVEY, MARY ELLEN · 2006 to 2007
$500k
NIDCR NIH HHS R01 DE019117NIDCR NIH HHS R01DE1019117NIDCR NIH HHS R21 DE017168NIDCR NIH HHS R21DE17168
6 · The paper itself

Abstract

K-antigen capsule synthesis is an important virulence determinant of the oral anaerobe Porphyromonas gingivalis. We previously reported that the locus required for synthesis of this surface polysaccharide in strain W83 (TIGR identification PG0106 to PG0120) is transcribed as a large (∼16.7-kb) polycistronic message. Through sequence analysis, we have now identified a 77-bp inverted repeat located upstream (206 bp) of the start codon of PG0106 that is capable of forming a large hairpin structure. Further sequence analysis just upstream and downstream of the capsule synthesis genes revealed the presence of two genes oriented in the same direction as the operon that are predicted to encode DNA binding proteins: PG0104, which is highly similar (57%) to DNA topoisomerase III, and PG0121, which has high similarity (72%) to DNA binding protein HU (β-subunit). In this report, we show that these two genes, as well as the 77-bp inverted repeat region, are cotranscribed with the capsule synthesis genes, resulting in a large transcript that is ∼19.4 kb (based on annotation). We also show that a PG0121 recombinant protein is a nonspecific DNA binding protein with strong affinity to the hairpin structure, in vitro, and that transcript levels of the capsule synthesis genes are downregulated in a PG0121 deletion mutant. Furthermore, we show that this decrease in transcript levels corresponds to a decrease in the amount of polysaccharide produced. Interestingly, expression analysis of another polysaccharide synthesis locus (PG1136 to PG1143) encoding genes involved in synthesis of a surface-associated phosphorylated branched mannan (APS) indicated that this locus is also downregulated in the PG0121 mutant. Altogether our data indicate that HU protein modulates expression of surface polysaccharides in P. gingivalis strain W83.

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticBacterial ProteinsDNA-Binding ProteinsGene DeletionGene Expression ProfilingGlycosyltransferasesPolysaccharides, BacterialPorphyromonas gingivalisTranscription FactorsBacterial ProteinsDNA-Binding ProteinsGlycosyltransferaseshistone-like protein HU, bacteriaPolysaccharides, BacterialTranscription Factors

Identifiers

PMID20889748
PMCPMC2981211
OpenAlexW2095948861

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.