Evidence map›Paper›PMID 20886151›Full record

ReviewIntegrative biology : quantitative biosciences from nano to macro2010

Tools for analyzing cell shape changes during chemotaxis.

Yuan Xiong, Pablo A Iglesias

Abstract readReview
In one paragraph

Review in Integrative biology : quantitative biosciences from nano to macro, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Computational Analysis of Cell Dynamics in Videos with Hierarchical-Pooled Deep-Convolutional Features.Journal of computational biology : a journal of computational molecular cell biology · 2018
    Article
  9. Recent advances in morphological cell image analysis.Computational and mathematical methods in medicine · 2012
    Review
  10. Excitable behavior in amoeboid chemotaxis.Wiley interdisciplinary reviews. Systems biology and medicine
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yuan XiongDepartment of Electrical and Computer Engineering, The Johns Hopkins University, 3400 N Charles Street, Baltimore, MD 21218, USA.
Pablo A Iglesias

Funding

Modeling of chemotactic sensing in DictyosteliumR01GM071920 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI IGLESIAS, PABLO A. · 2004 to 2007
$1.6M
Computational Models of Cell DivisionR01GM086704 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI IGLESIAS, PABLO A., ROBINSON, DOUGLAS N · 2010 to 2013
$1.2M
NIGMS NIH HHS GM086704NIGMS NIH HHS GM71920NIGMS NIH HHS R01 GM071920NIGMS NIH HHS R01 GM086704
6 · The paper itself

Abstract

Chemotaxis refers to the ability of cells to sense the direction of external chemical gradients and respond by migrating towards the source. A thorough understanding of the chemotactic response of amoebae and neutrophils requires careful quantification of the cell shape changes observed during cell movement. The stochastic nature of this response calls for a statistical characterization of cellular morphology and this requires the processing of large data sets. For this reason, automatic image analysis algorithms are highly desirable and are becoming increasingly available. These usually include a combination of techniques from image segmentation, morphological transformations, as well as the incorporation of numerical algorithms and physical models. Here we review recent developments in the tracking and understanding of motile chemotaxing cells, with a particular emphasis on the description of pseudopodial activity in chemotactic Dictyostelium cells.

Indexed as

AlgorithmsAnimalsCell ShapeChemotaxisDictyosteliumHumansImage Processing, Computer-AssistedModels, BiologicalNeutrophilsPseudopodia

Identifiers

PMID20886151
PMCPMC4547348

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.