Evidence map›Paper›PMID 20886101›Full record

ArticlePLoS pathogens2010

HLA class I binding of HBZ determines outcome in HTLV-1 infection.

Aidan Macnamara, Aileen Rowan, Silva Hilburn, Ulrich Kadolsky, Hiroshi Fujiwara, Koichiro Suemori, Masaki Yasukawa, Graham Taylor, Charles R M Bangham, Becca Asquith

Open access · goldAbstract readComparative Study
In one paragraph

Article in PLoS pathogens, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 145 citations in OpenAlex.

  1. Trial
  2. Loss of HTLV-1-specific CD8Blood neoplasia · 2026
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. A role for an HTLV-1 vaccine?Frontiers in immunology · 2022
    Review
  15. Review
  16. Review
  17. Latency Reversing Agents: Kick and Kill of HTLV-1?International journal of molecular sciences · 2021
    Review
  18. Human retroviral antisense mRNAs are retained in the nuclei of infected cells for viral persistence.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  19. Article
  20. Article

23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Aidan MacnamaraDepartment of Immunology, Faculty of Medicine, Imperial College, London, United Kingdom.
Aileen Rowan
Silva Hilburn
Ulrich Kadolsky
Hiroshi Fujiwara
Koichiro Suemori
Masaki Yasukawa
Graham Taylor
Charles R M Bangham
Becca Asquith
Imperial College London · GBEhime University · JP

Funding

Cancer Research UKMedical Research Council G0601072Wellcome TrustWellcome Trust WT078326
6 · The paper itself

Abstract

CD8(+) T cells can exert both protective and harmful effects on the virus-infected host. However, there is no systematic method to identify the attributes of a protective CD8(+) T cell response. Here, we combine theory and experiment to identify and quantify the contribution of all HLA class I alleles to host protection against infection with a given pathogen. In 432 HTLV-1-infected individuals we show that individuals with HLA class I alleles that strongly bind the HTLV-1 protein HBZ had a lower proviral load and were more likely to be asymptomatic. We also show that in general, across all HTLV-1 proteins, CD8(+) T cell effectiveness is strongly determined by protein specificity and produce a ranked list of the proteins targeted by the most effective CD8(+) T cell response through to the least effective CD8(+) T cell response. We conclude that CD8(+) T cells play an important role in the control of HTLV-1 and that CD8(+) cells specific to HBZ, not the immunodominant protein Tax, are the most effective. We suggest that HBZ plays a central role in HTLV-1 persistence. This approach is applicable to all pathogens, even where data are sparse, to identify simultaneously the HLA Class I alleles and the epitopes responsible for a protective CD8(+) T cell response.

Indexed as

AllelesBasic-Leucine Zipper Transcription FactorsCase-Control StudiesCD8-Positive T-LymphocytesCohort StudiesEpitopesGene Products, taxGenes, MHC Class IHTLV-I InfectionsHumansHuman T-lymphotropic virus 1Peptide FragmentsRetroviridae ProteinsSoftwareT-Lymphocytes, CytotoxicViral LoadBasic-Leucine Zipper Transcription FactorsEpitopesGene Products, taxHBZ protein, human T-cell leukemia virus type IPeptide FragmentsRetroviridae ProteinsViral Proteins

Identifiers

PMID20886101
PMCPMC2944806
OpenAlexW1984903732

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.