Evidence map›Paper›PMID 20886100›Full record

ArticlePLoS pathogens2010

A major determinant of cyclophilin dependence and cyclosporine susceptibility of hepatitis C virus identified by a genetic approach.

Feng Yang, Jason M Robotham, Henry Grise, Stephen Frausto, Vanesa Madan, Margarita Zayas, Ralf Bartenschlager, Margaret Robinson, Andrew E Greenstein, Anita Nag and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Stem Cell-Derived Culture Models of Hepatitis E Virus Infection.Cold Spring Harbor perspectives in medicine · 2019
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Chaperones in hepatitis C virus infection.World journal of hepatology · 2016
    Review
  15. Article
  16. Article
  17. The role of immunophilins in viral infection.Biochimica et biophysica acta · 2015
    Article
  18. Review
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Feng YangDepartment of Biological Science, Florida State University, Tallahassee, Florida, United States of America.
Jason M Robotham
Henry Grise
Stephen Frausto
Vanesa Madan
Margarita Zayas
Ralf Bartenschlager
Margaret Robinson
Andrew E Greenstein
Anita Nag
Timothy M Logan
Ewa Bienkiewicz
Hengli Tang
Florida State University · USHeidelberg University · DEGilead Sciences (United States) · US

Funding

Cyclosporine, Cyclophilins and HCV ReplicationR01AI079150 · NIAID · FLORIDA STATE UNIVERSITY · PI TANG, HENGLI · 2009 to 2012
$1.3M
NIAID NIH HHS R01 AI079150NIAID NIH HHS R01AI079150
6 · The paper itself

Abstract

Since the advent of genome-wide small interfering RNA screening, large numbers of cellular cofactors important for viral infection have been discovered at a rapid pace, but the viral targets and the mechanism of action for many of these cofactors remain undefined. One such cofactor is cyclophilin A (CyPA), upon which hepatitis C virus (HCV) replication critically depends. Here we report a new genetic selection scheme that identified a major viral determinant of HCV's dependence on CyPA and susceptibility to cyclosporine A. We selected mutant viruses that were able to infect CyPA-knockdown cells which were refractory to infection by wild-type HCV produced in cell culture. Five independent selections revealed related mutations in a single dipeptide motif (D316 and Y317) located in a proline-rich region of NS5A domain II, which has been implicated in CyPA binding. Engineering the mutations into wild-type HCV fully recapitulated the CyPA-independent and CsA-resistant phenotype and four putative proline substrates of CyPA were mapped to the vicinity of the DY motif. Circular dichroism analysis of wild-type and mutant NS5A peptides indicated that the D316E/Y317N mutations (DEYN) induced a conformational change at a major CyPA-binding site. Furthermore, nuclear magnetic resonance experiments suggested that NS5A with DEYN mutations adopts a more extended, functional conformation in the putative CyPA substrate site in domain II. Finally, the importance of this major CsA-sensitivity determinant was confirmed in additional genotypes (GT) other than GT 2a. This study describes a new genetic approach to identifying viral targets of cellular cofactors and identifies a major regulator of HCV's susceptibility to CsA and its derivatives that are currently in clinical trials.

Indexed as

Drug Resistance, ViralGene Expression Regulation, ViralAmino Acid SequenceBlotting, WesternCell LineCircular DichroismCyclophilin ACyclosporineDEAD-box RNA HelicasesEnzyme-Linked Immunosorbent AssayHepacivirusHepatitis CHumansImmunoenzyme TechniquesImmunosuppressive AgentsMagnetic Resonance SpectroscopyCyclophilin ACyclosporineDEAD-box RNA HelicasesImmunosuppressive AgentsNS3 protein, hepatitis C virusNS-5 protein, hepatitis C virusNucleoside-TriphosphataseRNA-Dependent RNA PolymeraseRNA, MessengerRNA, Small InterferingRNA, ViralSerine EndopeptidasesViral Nonstructural ProteinsViral Proteases

Identifiers

PMID20886100
PMCPMC2944805
OpenAlexW2052472447

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.