Evidence map›Paper›PMID 20884053›Full record

ArticleMolecular immunology

The L2a element is a mouse CD8 silencer that interacts with MAR-binding proteins SATB1 and CDP.

Xin Yao, Hui Nie, Ingrid C Rojas, June V Harriss, Shanna D Maika, Paul D Gottlieb, Gary Rathbun, Philip W Tucker

Open access · greenAbstract read
In one paragraph

Article in Molecular immunology. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Xin YaoSection of Molecular Genetics and Microbiology, Institute for Cellular and Molecular Biology, University of Texas at Austin, 1 University Station A5000, Austin, TX 78721-0162, USA.
Hui Nie
Ingrid C Rojas
June V Harriss
Shanna D Maika
Paul D Gottlieb
Gary Rathbun
Philip W Tucker
The University of Texas at Austin · US

Funding

MAR MEDIATED GENETIC SWITCH FOR IGH ENHANCER CONTROLR01CA031534 · NCI · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI TUCKER, HALEY O · 1985 to 2012
$2.9M
INTERACTION OF CIS-ACTING ELEMENTS IN CD8 REGULATIONR01AI047209 · NIAID · UNIVERSITY OF TEXAS AUSTIN · PI TUCKER, PHILIP W. · 2001 to 2005
$1.5M
NCI NIH HHS CA31534NCI NIH HHS R01 CA031534NIAID NIH HHS AI47209NIAID NIH HHS R01 AI047209
6 · The paper itself

Abstract

Previous transgenic-reporter and targeted-deletion studies indicate that the subset-specific expression of CD8αβ heterodimers is controlled by multiple enhancer activities, since no silencer elements had been found within the locus. We have identified such a silencer as L2a, a previously characterized ∼ 220 bp nuclear matrix associating region (MAR) located ∼ 4.5 kb upstream of CD8α. L2a transgenes driven by the E8(I) enhancer showed no reporter expression in thymic subsets or T cells in splenic, inguinal and mesenteric lymph node peripheral T cells. Deletion of L2a resulted in significant reporter de-repression, even in the CD4(+)CD8(+) double positive (DP) thymocyte population. L2a contains binding sites for two MAR-interacting proteins, SATB1 and CDP. We found that that binding of these factors was markedly influenced by the content and spacing of L2a sub-motifs (L and S) and that SATB1 binds preferentially to the L motif both in vitro and in vivo. A small fraction of the transgenic CD8 single positive (SP) thymocytes and peripheral CD8(+) T cells bypassed L2a-silencing to give rise to variegated expression of the transgenic reporter. Crossing the L2a-containing transgene onto a SATB1 knockdown background enhanced variegated expression, suggesting that SATB1 is critical in overcoming L2a-silenced transcription.

Indexed as

AnimalsBase SequenceCD8 AntigensCell SeparationElectrophoretic Mobility Shift AssayFlow CytometryGene ExpressionGene Expression RegulationHomeodomain ProteinsMatrix Attachment Region Binding ProteinsMiceMice, TransgenicMolecular Sequence DataNuclear Matrix-Associated ProteinsNuclear ProteinsOligonucleotide Array Sequence AnalysisCD8 AntigensCux1 protein, mouseHomeodomain ProteinsMatrix Attachment Region Binding ProteinsNuclear Matrix-Associated ProteinsNuclear ProteinsRepressor ProteinsSatb1 protein, mouse

Identifiers

PMID20884053
PMCPMC2996921
OpenAlexW2000687543

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.