Evidence map›Paper›PMID 20882601›Full record

ArticleBiopolymers2011

Transcriptional tools: Small molecules for modulating CBP KIX-dependent transcriptional activators.

Caleb A Bates, William C Pomerantz, Anna K Mapp

Open access · greenAbstract read
In one paragraph

Article in Biopolymers, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Targeting Unoccupied Surfaces on Protein-Protein Interfaces.Journal of the American Chemical Society · 2017
    Article
  5. Article
  6. Review
  7. Prepaying the entropic cost for allosteric regulation in KIX.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  8. The role of HTS in drug discovery at the University of Michigan.Combinatorial chemistry & high throughput screening · 2014
    Review
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Caleb A BatesDepartment of Medicinal Chemistry, University of Michigan, Ann Arbor, MI 48109, USA.
William C Pomerantz
Anna K Mapp
University of Michigan–Ann Arbor · US

Funding

INTERDEPARTMENTAL TRAINING IN PHARMACOLOGICAL SCIENCEST32GM007767 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ISOM, LORI L. · 1985 to 2019
$10.2M
Targeting the ETV/PEA3 transcriptional circuitry with selective small molecule probesR01CA140667 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MAPP, ANNA K. · 2009 to 2020
$3.2M
Small Molecule Transcriptional Activator-Coactivator InteractionsF32GM090550 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI POMERANTZ, WILLIAM CHARLES KRAUSE · 2010 to 2011
$99k
NCI NIH HHS CA14067NCI NIH HHS R01 CA140667NIGMS NIH HHS F32 GM090550NIGMS NIH HHS GM007767NIGMS NIH HHS T32 GM007767
6 · The paper itself

Abstract

Previously it was demonstrated that amphipathic isoxazolidines are able to functionally replace the transcriptional activation domains of endogenous transcriptional activators. In addition, in vitro binding studies suggested that a key binding partner of these molecules is the CREB Binding Protein (CBP), more specifically the KIX domain within this protein. Here we show that CBP plays an essential role in the ability of isoxazolidine transcriptional activation domains to activate transcription in cells. Consistent with this model, isoxazolidines are able to function as competitive inhibitors of the activators MLL and Jun, both of which utilize a binding interaction with KIX to up-regulate transcription. Further, modification of the N2 side chain produced three analogs with enhanced potency against Jun-mediated transcription, although increased cytotoxicity was also observed. Collectively these small KIX-binding molecules will be useful tools for dissecting the role of the KIX domain in a variety of pathological processes.

Indexed as

Protein Interaction Domains and MotifsAmino Acid SequenceAnimalsBiopolymersCyclic AMP Response Element-Binding ProteinHeLa CellsHumansIsoxazolesMiceMolecular Sequence DataMolecular StructureTrans-ActivatorsBiopolymersCyclic AMP Response Element-Binding ProteinIsoxazolesTrans-Activators

Identifiers

PMID20882601
PMCPMC3535496
OpenAlexW2076213685

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.