Evidence map›Paper›PMID 20882534›Full record

ReviewWiley interdisciplinary reviews. Systems biology and medicine

The zebrafish: scalable in vivo modeling for systems biology.

Rahul C Deo, Calum A MacRae

Abstract readReview
In one paragraph

Review in Wiley interdisciplinary reviews. Systems biology and medicine. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. A Focal Impact Model of Traumatic Brain Injury inInternational journal of molecular sciences · 2022
    Article
  3. Article
  4. Article
  5. Review
  6. Zebrafish Models of Kidney Damage and Repair.Current pathobiology reports · 2015
    Article
  7. Article
  8. Advances in genomics of bony fish.Briefings in functional genomics · 2014
    Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Rahul C DeoCardiology Division, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.
Calum A MacRae
Harvard University · USMassachusetts General Hospital · US

Funding

Zebrafish Assays Predictive for Cardiotoxicity(RMI)R21GM075946 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI MACRAE, CALUM A. · 2005 to 2008
$1.6M
Development of a High-throughput Integrated In Vivo Heart Failure AssayR01HL109264 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MACRAE, CALUM A. · 2012 to 2014
$1.3M
Functional evaluation of GWAS loci for cardiovascular intermediate phenotypesR21HL098938 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MACRAE, CALUM A. · 2009 to 2010
$1.1M
Bioinformatic Approaches to Small Molecule Profiling of Cardiometabolic DiseaseK08HL098361 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEO, RAHUL CHANDRAKANT · 2010 to 2014
$685k
NHLBI NIH HHS K08 HL098361NHLBI NIH HHS R01 HL109264NHLBI NIH HHS R21 HL098938NIGMS NIH HHS R21 GM075946
6 · The paper itself

Abstract

The zebrafish offers a scalable vertebrate model for many areas of biologic investigation. There is substantial conservation of genetic and genomic features and, at a higher order, conservation of intermolecular networks, as well as physiologic systems and phenotypes. We highlight recent work demonstrating the extent of this homology, and efforts to develop high-throughput phenotyping strategies suited to genetic or chemical screening on a scale compatible with in vivo validation for systems biology. We discuss the implications of these approaches for functional annotation of the genome, elucidation of multicellular processes in vivo, and mechanistic exploration of hypotheses generated by a broad range of 'unbiased' 'omic technologies such as expression profiling and genome-wide association. Finally, we outline potential strategies for the application of the zebrafish to the systematic study of phenotypic architecture, disease heterogeneity and drug responses.

Indexed as

Disease Models, AnimalGenomeAnimalsGenome-Wide Association StudyMolecular Sequence AnnotationSystems BiologyZebrafish

Identifiers

PMID20882534
PMCPMC3251331
OpenAlexW2092642806

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.