Evidence map›Paper›PMID 20882228›Full record

ArticleIntegrative biology : quantitative biosciences from nano to macro2010

Gradient sensing in defined chemotactic fields.

Monica Skoge, Micha Adler, Alex Groisman, Herbert Levine, William F Loomis, Wouter-Jan Rappel

Abstract read
In one paragraph

Article in Integrative biology : quantitative biosciences from nano to macro, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Collective gradient sensing and chemotaxis: modeling and recent developments.Journal of physics. Condensed matter : an Institute of Physics journal · 2018
    Review
  5. Article
  6. Adaptation of Living Systems.Annual review of condensed matter physics · 2018
    Article
  7. Mechanisms of Cell Polarization.Current opinion in systems biology · 2017
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Spatial manipulation with microfluidics.Frontiers in bioengineering and biotechnology · 2015
    Review
  13. Cellular memory in eukaryotic chemotaxis.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  14. Dipeptidyl peptidase IV is a human and murine neutrophil chemorepellent.Journal of immunology (Baltimore, Md. : 1950) · 2013
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Chemotaxis in cancer.Nature reviews. Cancer · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Monica SkogeDivision of Biological Sciences, University of California, La Jolla, CA 92093, USA.
Micha Adler
Alex Groisman
Herbert Levine
William F Loomis
Wouter-Jan Rappel
University of California, San Diego · USCenter for Theoretical Biological Physics · US

Funding

Project 5P01GM078586 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RAPPEL, WOUTER-JAN · 2007 to 2016
$11.2M
NIGMS NIH HHS P01 GM078586
6 · The paper itself

Abstract

Cells respond to a variety of secreted molecules by modifying their physiology, growth patterns, and behavior. Motile bacteria and eukaryotic cells can sense extracellular chemoattractants and chemorepellents and alter their movement. In this way fibroblasts and leukocytes can find their way to sites of injury and cancer cells can home in on sites that are releasing growth factors. Social amoebae such as Dictyostelium are chemotactic to cAMP which they secrete several hours after they have initiated development. These eukaryotic cells are known to be able to sense extremely shallow gradients but the processes underlying their exquisite sensitivity are still largely unknown. In this study we determine the responses of developed cells of Dictyostelium discoideum to stable linear gradients of cAMP of varying steepness generated in 2 μm deep gradient chambers of microfluidic devices. The gradients are generated by molecular diffusion between two 80 μm deep flow-through channels, one of which is perfused with a solution of cAMP and the other with buffer, serving as continuously replenished source and sink. These low ceiling gradient chambers constrained the cells in the vertical dimension, facilitating confocal imaging, such that subcellular localization of fluorescently tagged proteins could be followed for up to 30 min without noticeable phototoxicity. Chemotactic cells enter these low ceiling chambers by flattening and elongating and then move almost as rapidly as unconstrained cells. By following the localization of activated Ras (RasGTP) using a Ras Binding Domain fused to Green Fluorescent Protein (RBD-GFP), we observed the rapid appearance of membrane associated patches at the tips of pseudopods. These patches remained associated with pseudopods while they continued to extend but were rapidly disassembled when pseudopods stalled and the cell moved past them. Likewise, fluorescence associated with localized RasGTP rapidly disappeared when the gradient was turned off. Correlation of the size and persistence of RasGTP patches with extension of pseudopods may set the rules for understanding how the signal transduction mechanisms convert a weak external signal to a strong directional bias.

Indexed as

ActinsCell TrackingChemotactic FactorsChemotaxisCyclic AMPDictyosteliumGreen Fluorescent ProteinsMicrofluidic Analytical TechniquesPseudopodiaras ProteinsRecombinant Fusion ProteinsSignal TransductionActinsChemotactic FactorsCyclic AMPGreen Fluorescent Proteinsras ProteinsRecombinant Fusion Proteins

Identifiers

PMID20882228
PMCPMC3052262
OpenAlexW2119276853

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.