Evidence map›Paper›PMID 20880994›Full record

ArticleNucleic acids research2011

Formation of a G-quadruplex at the BCL2 major breakpoint region of the t(14;18) translocation in follicular lymphoma.

Mridula Nambiar, G Goldsmith, Balaji T Moorthy, Michael R Lieber, Mamata V Joshi, Bibha Choudhary, Ramakrishna V Hosur, Sathees C Raghavan

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 121 citations in OpenAlex.

  1. Article
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  8. Mutations atMolecular and cellular biology · 2024
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  14. Review
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  17. MiRAGDB: A Knowledgebase of RAG Regulators.Frontiers in immunology · 2022
    Article
  18. The Relevance of G-Quadruplexes for DNA Repair.International journal of molecular sciences · 2021
    Review
  19. Review
  20. Article

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Mridula NambiarDepartment of Biochemistry, Indian Institute of Science, Bangalore-560 012, India.
G Goldsmith
Balaji T Moorthy
Michael R Lieber
Mamata V Joshi
Bibha Choudhary
Ramakrishna V Hosur
Sathees C Raghavan
University of Southern California · USIndian Institute of Science Bangalore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The t(14;18) translocation in follicular lymphoma is one of the most common chromosomal translocations. Most breaks on chromosome 18 are located at the 3'-UTR of the BCL2 gene and are mainly clustered in the major breakpoint region (MBR). Recently, we found that the BCL2 MBR has a non-B DNA character in genomic DNA. Here, we show that single-stranded DNA modeled from the template strand of the BCL2 MBR, forms secondary structures that migrate faster on native PAGE in the presence of potassium, due to the formation of intramolecular G-quadruplexes. Circular dichroism shows evidence for a parallel orientation for G-quadruplex structures in the template strand of the BCL2 MBR. Mutagenesis and the DMS modification assay confirm the presence of three guanine tetrads in the structure. 1H nuclear magnetic resonance studies further confirm the formation of an intramolecular G-quadruplex and a representative model has been built based on all of the experimental evidence. We also provide data consistent with the possible formation of a G-quadruplex structure at the BCL2 MBR within mammalian cells. In summary, these important features could contribute to the single-stranded character at the BCL2 MBR, thereby contributing to chromosomal fragility.

Indexed as

Chromosome BreakpointsChromosomes, Human, Pair 14Chromosomes, Human, Pair 18Genes, bcl-2G-QuadruplexesTranslocation, GeneticHumansLymphoma, FollicularModels, MolecularMutationNuclear Magnetic Resonance, BiomolecularSulfuric Acid EstersTaq PolymeraseTranscription, Geneticdimethyl sulfateSulfuric Acid EstersTaq Polymerase

Identifiers

PMID20880994
PMCPMC3035451
OpenAlexW2100693064

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.