ArticleEnvironmental microbiology2011
Nutrient-regulated transcriptional responses in the brown tide-forming alga Aureococcus anophagefferens.
Article in Environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
25 citing papers in PubMed.
- Complete chloroplast genome of Ecklonia maxima and comparative analysis with related species.BMC genomics · 2025Article
- Article
- A Potent Antibacterial Peptide (P6) from the De Novo Transcriptome of the MicroalgaInternational journal of molecular sciences · 2024Article
- Mechanism by Which MC Controls Harmful Algal Blooms Revealed by Cell Morphology ofInternational journal of environmental research and public health · 2021Article
- Internal Nitrogen Pools Shape the Infection ofFrontiers in microbiology · 2020Article
- Influence of light on the infection of Aureococcus anophagefferens CCMP 1984 by a "giant virus".PloS one · 2020Article
- Transcriptional Shifts Highlight the Role of Nutrients in Harmful Brown Tide Dynamics.Frontiers in microbiology · 2019Article
- Quantitative Proteomics Reveals Common and Specific Responses of a Marine DiatomFrontiers in microbiology · 2018Article
- Article
- Utilization of urea and expression profiles of related genes in the dinoflagellate Prorocentrum donghaiense.PloS one · 2017Article
- Conserved Transcriptional Responses to Nutrient Stress in Bloom-Forming Algae.Frontiers in microbiology · 2017Article
- Transcriptome Analysis of Scrippsiella trochoidea CCMP 3099 Reveals Physiological Changes Related to Nitrate Depletion.Frontiers in microbiology · 2016Article
- Daily transcriptome changes reveal the role of nitrogen in controlling microcystin synthesis and nutrient transport in the toxic cyanobacterium, Microcystis aeruginosa.BMC genomics · 2015Article
- Whole-cell response to nitrogen deprivation in the diatom Phaeodactylum tricornutum.Journal of experimental botany · 2015Article
- Changes in gene expression of Prymnesium parvum induced by nitrogen and phosphorus limitation.Frontiers in microbiology · 2015Article
- Nutrients drive transcriptional changes that maintain metabolic homeostasis but alter genome architecture in Microcystis.The ISME journal · 2014Article
- Understanding strategy of nitrate and urea assimilation in a Chinese strain of Aureococcus anophagefferens through RNA-seq analysis.PloS one · 2014Article
- De novo assembly of Aureococcus anophagefferens transcriptomes reveals diverse responses to the low nutrient and low light conditions present during blooms.Frontiers in microbiology · 2014Article
- "Eco-omics": a review of the application of genomics, transcriptomics, and proteomics for the study of the ecology of harmful algae.Microbial ecology · 2013Review
- Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
Abstract
Long-SAGE (serial analysis of gene expression) was used to profile the transcriptome of the brown tide-forming alga, Aureococcus anophagefferens, under nutrient replete (control), and nitrogen (N) and phosphorus (P) deficiency to understand how this organism responds at the transcriptional level to varying nutrient conditions. This approach has aided A. anophagefferens genome annotation efforts and identified a suite of genes upregulated by N and P deficiency, some of which have known roles in nutrient metabolism. Genes upregulated under N deficiency include an ammonium transporter, an acetamidase/formamidase and two peptidases. This suggests an ability to utilize reduced N compounds and dissolved organic nitrogen, supporting the hypothesized importance of these N sources in A. anophagefferens bloom formation. There are also a broad suite of P-regulated genes, including an alkaline phosphatase, and two 5'-nucleotidases, suggesting A. anophagefferens may use dissolved organic phosphorus under low phosphate conditions. These N- and P-regulated genes may be important targets for exploring nutrient controls on bloom formation in field populations.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.