Evidence map›Paper›PMID 20879713›Full record

ArticleBiochemistry2010

Kinetics and inhibition of nicotinamidase from Mycobacterium tuberculosis.

Derrick R Seiner, Subray S Hegde, John S Blanchard

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 33 citations in OpenAlex.

  1. TargetingACS omega · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Biomolecules · 2022
    Article
  7. Article
  8. Article
  9. A Key Enzyme of the NADJournal of bacteriology · 2017
    Article
  10. Article
  11. Meat Intake and the Dose of Vitamin BInternational journal of tryptophan research : IJTR · 2017
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Role of metal ions on the activity of Mycobacterium tuberculosis pyrazinamidase.The American journal of tropical medicine and hygiene · 2012
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Derrick R SeinerDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY 10461, USA.
Subray S Hegde
John S Blanchard
Albert Einstein College of Medicine · US

Funding

MECHANISMS BASED INHIBITION OF M TUBERCULOSIS ENZYMESR01AI033696 · NIAID · YESHIVA UNIVERSITY · PI BLANCHARD, JOHN S · 1992 to 2012
$7.7M
NIAID NIH HHS AI33696NIAID NIH HHS R01 AI033696
6 · The paper itself

Abstract

Nicotinamidase/pyrazinamidase (PncA) is involved in the NAD+ salvage pathway of Mycobacterium tuberculosis and other bacteria. In addition to hydrolyzing nicotinamide into nicotinic acid, PncA also hydrolyzes the prodrug pyrazinamide to generate the active form of the drug, pyrazinoic acid, which is an essential component of the multidrug treatment of TB. A coupled enzymatic activity assay has been developed for PncA that allows for the spectroscopic observation of enzyme activity. The enzyme activity was essentially pH-independent under the conditions tested; however, the measurement of the pH dependence of iodoacetamide alkylation revealed a pK value of 6.6 for the active site cysteine. Solvent deuterium kinetic isotope effects revealed an inverse value for kcat of 0.64, reconfirming the involvement of a thiol group in the mechanism. A mechanism is proposed for PncA catalysis that is similar to the mechanisms proposed for members of the nitrilase superfamily, in which nucleophilic attack by the active site cysteine generates a tetrahedral intermediate that collapses with the loss of ammonia and subsequent hydrolysis of the thioester bond by water completes the cycle. An inhibitor screen identified the competitive inhibitor 3-pyridine carboxaldehyde with a Ki of 290 nM. Additionally, pyrazinecarbonitrile was found to be an irreversible inactivator of PncA, with a kinact/KI of 975 M(−1) s(−1).

Indexed as

AmidohydrolasesAntitubercular AgentsCloning, MolecularHumansMycobacterium bovisMycobacterium tuberculosisPyrazinamideTuberculosisAmidohydrolasesAntitubercular AgentsPncA protein, Mycobacterium tuberculosisPyrazinamide

Identifiers

PMID20879713
PMCPMC3029496
OpenAlexW1977529741

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.