ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2011
Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.
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61 citing papers in PubMed.
- Advancing anthracnose resistance in dry beans through the transition from traditional to computational breeding efforts.Frontiers in plant science · 2026Review
- GW3, encoding a member of the P450 subfamily, controls grain width by regulating the GATAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Quantitative Trait Loci Mapping and Comparative Transcriptome Analysis of Fruit Weight (FW) in Watermelon (Genes · 2024Article
- Major quantitative trait locus qLA3.1 is related to tomato leaf angle by regulating cell length at the petiole base.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Quantitative trait loci associated with straighthead-resistance used for marker assisted selection in rice (PeerJ · 2023Article
- Characterization of Domestication Loci Associated with Awn Development in Rice.Rice (New York, N.Y.) · 2022Article
- AirMeasurer: open-source software to quantify static and dynamic traits derived from multiseason aerial phenotyping to empower genetic mapping studies in rice.The New phytologist · 2022Article
- Mutation of glucose-methanol-choline oxidoreductase leads to thermosensitive genic male sterility in rice and Arabidopsis.Plant biotechnology journal · 2022Article
- Single marker analysis for leaf gas exchange traits from RILS of RD 23 (O. sativa L.) and O. longistaminata.Biotechnology reports (Amsterdam, Netherlands) · 2022Article
- Whole-Genome Sequencing of 117 Chromosome Segment Substitution Lines for Genetic Analyses of Complex Traits in Rice.Rice (New York, N.Y.) · 2022Article
- High-density genetic mapping identified QTLs for anaerobic germination tolerance in rice.Frontiers in plant science · 2022Article
- Quantitative trait loci for growth-related traits in Japanese quail (Coturnix japonica) using restriction-site associated DNA sequencing.Molecular genetics and genomics : MGG · 2021Article
- Identification and characterization of An-4, a potential quantitative trait locus for awn development in rice.BMC plant biology · 2021Article
- Article
- Genetic analysis of rice seedling traits related to machine transplanting under different seeding densities.BMC genetics · 2020Article
- Genetic mapping and identification of new major loci for tolerance to low phosphorus stress in rice.Physiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Genome wide screening and comparative genome analysis for Meta-QTLs, ortho-MQTLs and candidate genes controlling yield and yield-related traits in rice.BMC genomics · 2020Article
- Article
- Genetic Dissection of Germinability under Low Temperature by Building a Resequencing Linkage Map inInternational journal of molecular sciences · 2020Article
- Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq.BMC genomics · 2019Article
1 more citing papers are in PubMed but not listed here.
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8 authors.
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Abstract
Mapping chromosome regions responsible for quantitative phenotypic variation in recombinant populations provides an effective means to characterize the genetic basis of complex traits. We conducted a quantitative trait loci (QTL) analysis of 150 rice recombinant inbred lines (RILs) derived from a cross between two cultivars, Oryza sativa ssp. indica cv. 93-11 and Oryza sativa ssp. japonica cv. Nipponbare. The RILs were genotyped through next-generation sequencing, which accurately determined the recombination breakpoints and provided a new type of genetic markers, recombination bins, for QTL analysis. We detected 49 QTL with phenotypic effect ranging from 3.2 to 46.0% for 14 agronomics traits. Five QTL of relatively large effect (14.6-46.0%) were located on small genomic regions, where strong candidate genes were found. The analysis using sequencing-based genotyping thus offers a powerful solution to map QTL with high resolution. Moreover, the RILs developed in this study serve as an excellent system for mapping and studying genetic basis of agricultural and biological traits of rice.
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