Evidence map›Paper›PMID 20877436›Full record

ArticleInternational journal of biological sciences2010

BP1, an isoform of DLX4 homeoprotein, negatively regulates BRCA1 in sporadic breast cancer.

Brian J Kluk, Yebo Fu, Trina A Formolo, Lei Zhang, Anne K Hindle, Yan-gao Man, Robert S Siegel, Patricia E Berg, Chuxia Deng, Timothy A McCaffrey and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of biological sciences, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Nanostructured gold dsDNA sensor for early detection of breast cancer by beta protein 1 (BPJournal of electroanalytical chemistry (Lausanne, Switzerland) · 2015
    Article
  5. Article
  6. Article
  7. Article
  8. DLX4 upregulates TWIST and enhances tumor migration, invasion and metastasis.International journal of biological sciences · 2012
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Brian J KlukDepartment of Medicine, Division of Genomic Medicine, George Washington University Medical Center, Washington, DC, USA.
Yebo Fu
Trina A Formolo
Lei Zhang
Anne K Hindle
Yan-gao Man
Robert S Siegel
Patricia E Berg
Chuxia Deng
Timothy A McCaffrey
Sidney W Fu
Washington University Medical Center · USGeorge Washington University · USArmed Forces Institute of Pathology · USNational Institutes of Health · USUniversity of Maryland, Baltimore · US

Funding

Chemoprevention and therapeutic treatment of BRCA1 associated mammary tumorsZIADK056009 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DENG, CHUXIA · 2009 to 2014
$4.0M
BRCA1, DNA damage response and agingZIADK056010 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DENG, CHUXIA · 2009 to 2014
$3.9M
Roles of BRCA1 transcription target genes in tumorigenesis and agingZIADK056011 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DENG, CHUXIA · 2009 to 2014
$3.9M
Brca1 in development and tumorigenesisZIADK056001 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DENG, CHUXIA · 2009 to 2012
$2.2M
Functions of fibroblast growth factor receptorsZIADK056004 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI DENG, CHUXIA · 2009 to 2011
$1.5M
Deregulated BP1 expression in breast carcinogenesisR03CA102928 · NCI · GEORGE WASHINGTON UNIVERSITY · PI FU, SIDNEY W · 2004 to 2005
$153k
NCI NIH HHS CA102928NCI NIH HHS R03 CA102928
6 · The paper itself

Abstract

introductionSeveral lines of evidence point to an important role for BP1, an isoform of DLX4 homeobox gene, in breast carcinogenesis and progression. BRCA1 is a well-known player in the etiology of breast cancer. While familial breast cancer is often marked by BRCA1 mutation and subsequent loss of heterozygosity, sporadic breast cancers exhibit reduced expression of wild type BRCA1, and loss of BRCA1 expression may result in tumor development and progression.

methodsThe Cister algorithm and Genomatix program were used to identify potential BP1 binding sites in BRCA1 gene. Real-time PCR, Western blot and immunohistochemistry analysis were performed to verify the expression of BRCA1 and BP1 in cell lines and breast cancer tissues. Double-stranded siRNA transfection was carried out for silencing BP1 expression. ChIP and EMSA were used to confirm that BP1 specifically binds to BRCA1.

resultsA putative BP1 binding site was identified in the first intron of BRCA1, which was confirmed by chromatin immunoprecipiation and electrophoresis mobility shift assay. BP1 and BRCA1 expression were inversely correlated in breast cancer cell lines and tissues, suggesting that BP1 may suppress BRCA1 transcription through consensus sequence binding.

conclusionsBP1 homeoprotein represses BRCA1 expression through direct binding to its first intron, which is consistent with a previous study which identified a novel transcriptional repressor element located more than 500 base pairs into the first intron of BRCA1, suggesting that the first intron plays an important role in the negative regulation of BRCA1. Although further functional studies are necessary to confirm its repressor activity towards BRCA1, the elucidation of the role of BP1 in breast tumorigenesis holds great promise in establishing BP1 as a novel target for drug therapy.

Indexed as

Gene Expression Regulation, NeoplasticGenes, BRCA1Binding SitesBreast NeoplasmsCell Line, TumorChromatin ImmunoprecipitationConsensus SequenceElectrophoretic Mobility Shift AssayFemaleHomeodomain ProteinsHumansProtein IsoformsRepressor ProteinsRNA InterferenceSequence Analysis, DNATranscription FactorsDLX4 protein, humanHomeodomain ProteinsProtein IsoformsRepressor ProteinsTranscription FactorsBP1BRCA1breast cancer.DLX4homeoprotein

Identifiers

PMID20877436
PMCPMC2945279
OpenAlexW2126950575

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.