Evidence map›Paper›PMID 20876616›Full record

ReviewHuman molecular genetics2010

Fine-scale population structure and the era of next-generation sequencing.

Brenna M Henn, Simon Gravel, Andres Moreno-Estrada, Suehelay Acevedo-Acevedo, Carlos D Bustamante

Abstract readReview
In one paragraph

Review in Human molecular genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Appreciating diversity: a review of the Iranian genomic landscape.European journal of human genetics : EJHG · 2026
    Review
  3. Article
  4. Article
  5. Genome-Wide Association Studies of Chemotherapeutic Toxicities: Genomics of Inequality.Clinical cancer research : an official journal of the American Association for Cancer Research · 2017
    Review
  6. Article
  7. Fine-scale human genetic structure in Western France.European journal of human genetics : EJHG · 2015
    Article
  8. Estimating the mutation load in human genomes.Nature reviews. Genetics · 2015
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. The GenoChip: a new tool for genetic anthropology.Genome biology and evolution · 2013
    Article
  15. Article
  16. The great human expansion.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Brenna M HennDepartment of Genetics, Stanford University School of Medicine, 300 Pasteur Drive, Stanford, CA 94305, USA.
Simon Gravel
Andres Moreno-Estrada
Suehelay Acevedo-Acevedo
Carlos D Bustamante

Funding

Northwest Genomics CenterRC2HL102926 · NHLBI · UNIVERSITY OF WASHINGTON · PI GREEN, PHILIP P, NICKERSON, DEBORAH A · 2009 to 2009
$11.0M
Population Genetic Inferences From Dense Genotype DataR01HG003229 · NHGRI · CORNELL UNIVERSITY ITHACA · PI BUSTAMANTE, CARLOS DANIEL, CLARK, ANDREW G · 2004 to 2013
$4.8M
Association Mapping in Structured PopulationsR01GM083606 · NIGMS · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL · 2007 to 2010
$1.3M
NHGRI NIH HHS 2R01HG003229NHLBI NIH HHS 1RC2HL102926NIGMS NIH HHS 1R01GM083606
6 · The paper itself

Abstract

Fine-scale population structure characterizes most continents and is especially pronounced in non-cosmopolitan populations. Roughly half of the world's population remains non-cosmopolitan and even populations within cities often assort along ethnic and linguistic categories. Barriers to random mating can be ecologically extreme, such as the Sahara Desert, or cultural, such as the Indian caste system. In either case, subpopulations accumulate genetic differences if the barrier is maintained over multiple generations. Genome-wide polymorphism data, initially with only a few hundred autosomal microsatellites, have clearly established differences in allele frequency not only among continental regions, but also within continents and within countries. We review recent evidence from the analysis of genome-wide polymorphism data for genetic boundaries delineating human population structure and the main demographic and genomic processes shaping variation, and discuss the implications of population structure for the distribution and discovery of disease-causing genetic variants, in the light of the imminent availability of sequencing data for a multitude of diverse human genomes.

Indexed as

Genetic VariationGenome, HumanHigh-Throughput Nucleotide SequencingHumansPolymorphism, Genetic

Identifiers

PMID20876616
PMCPMC2953744

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.