Evidence map›Paper›PMID 20876214›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2011

Rapid activation of the bivalent gene Sox21 requires displacement of multiple layers of gene-silencing machinery.

Harini Chakravarthy, Briana D Ormsbee, Sunil K Mallanna, Angie Rizzino

Abstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
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  5. Article
  6. The Role of Gammaherpesviruses in Cancer Pathogenesis.Pathogens (Basel, Switzerland) · 2016
    Review
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  11. Review
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  13. Article
  14. The molecular circuitry underlying pluripotency in embryonic stem cells.Wiley interdisciplinary reviews. Systems biology and medicine
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Harini ChakravarthyEppley Cancer Institute, University of Nebraska Medical Center, Omaha, Nebraska, USA.
Briana D Ormsbee
Sunil K Mallanna
Angie Rizzino
University of Nebraska Medical Center · US

Funding

UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Steven H Caplan · 1985 to 2026
$55.0M
CHEMICAL CARCINOGENESIS &CANCER BIOLOGYT32CA009476 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Jennifer D. Black · 1988 to 2026
$6.2M
Regulation of Growth Factors and EmbryogenesisR01GM080751 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI RIZZINO, A. ANGIE · 2007 to 2010
$1.2M
NCI NIH HHS CA009476NCI NIH HHS CA36727NCI NIH HHS P30 CA036727NCI NIH HHS T32 CA009476NIGMS NIH HHS GM 080751NIGMS NIH HHS R01 GM080751
6 · The paper itself

Abstract

The rapid formation of numerous tissues during development is highly dependent on the swift activation of key developmental regulators. Recent studies indicate that many key regulatory genes are repressed in embryonic stem cells (ESCs), yet poised for rapid activation due to the presence of both activating (H3K4 trimethylation) and repressive (H3K27 trimethylation) histone modifications (bivalent genes). However, little is known about bivalent gene regulation. In this study, we investigated the regulation of the bivalent gene Sox21, which is activated rapidly when ESCs differentiate in response to increases in Sox2. Chromatin immunoprecipitation demonstrated that prior to differentiation, the Sox21 gene is bound by a complex array of repressive and activating transcriptional machinery. Upon activation, all identified repressive machinery and histone modifications associated with the gene are lost, but the activating modifications and transcriptional machinery are retained. Notably, these changes do not occur when ESCs differentiate in response to retinoic acid. Moreover, ESCs lacking a functional PRC2 complex fail to activate this gene, apparently due to its association with other repressive complexes. Together, these findings suggest that bivalent genes, such as Sox21, are silenced by a complex set of redundant repressive machinery, which exit rapidly in response to appropriate differentiation signals.

Indexed as

Transcriptional ActivationAnimalsCell DifferentiationCell LineChromatin ImmunoprecipitationEmbryonic Stem CellsMiceMultiprotein ComplexesOctamer Transcription Factor-3Promoter Regions, GeneticProtein BindingReverse Transcriptase Polymerase Chain ReactionSOXB1 Transcription FactorsSOXB2 Transcription FactorsTime FactorsTretinoinMultiprotein ComplexesOctamer Transcription Factor-3Pou5f1 protein, mouseSox21 protein, mouseSox2 protein, mouseSOXB1 Transcription FactorsSOXB2 Transcription FactorsTretinoin

Identifiers

PMID20876214
PMCPMC3005418
OpenAlexW1999189368

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.