Evidence map›Paper›PMID 20876125›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Right-handed double-helix ultrashort DNA yields chiral nematic phases with both right- and left-handed director twist.

Giuliano Zanchetta, Fabio Giavazzi, Michi Nakata, Marco Buscaglia, Roberto Cerbino, Noel A Clark, Tommaso Bellini

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Review
  7. Chiral Systems Made from DNA.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021
    Review
  8. Article
  9. Free energy of conformational isomers: The case of gapped DNA duplexes.The European physical journal. E, Soft matter · 2019
    Article
  10. Speeding up Monte Carlo simulation of patchy hard cylinders.The European physical journal. E, Soft matter · 2018
    Article
  11. Article
  12. Lyotropic Liquid Crystal Phases from Anisotropic Nanomaterials.Nanomaterials (Basel, Switzerland) · 2017
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Evidence of liquid crystal-assisted abiotic ligation of nucleic acids.Origins of life and evolution of the biosphere : the journal of the International Society for the Study of the Origin of Life · 2015
    Article
  18. Article
  19. Topological friction strongly affects viral DNA ejection.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Giuliano ZanchettaDipartimento di Chimica, Biochimica e Biotecnologie per la Medicina, Università degli studi di Milano, Via Saldini 50, Milan, Italy 20133.
Fabio Giavazzi
Michi Nakata
Marco Buscaglia
Roberto Cerbino
Noel A Clark
Tommaso Bellini
University of Milan · ITUniversity of Colorado Boulder · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Concentrated solutions of duplex-forming DNA oligomers organize into various mesophases among which is the nematic (N(∗)), which exhibits a macroscopic chiral helical precession of molecular orientation because of the chirality of the DNA molecule. Using a quantitative analysis of the transmission spectra in polarized optical microscopy, we have determined the handedness and pitch of this chiral nematic helix for a large number of sequences ranging from 8 to 20 bases. The B-DNA molecule exhibits a right-handed molecular double-helix structure that, for long molecules, always yields N(∗) phases with left-handed pitch in the μm range. We report here that ultrashort oligomeric duplexes show an extremely diverse behavior, with both left- and right-handed N(∗) helices and pitches ranging from macroscopic down to 0.3 μm. The behavior depends on the length and the sequence of the oligomers, and on the nature of the end-to-end interactions between helices. In particular, the N(∗) handedness strongly correlates with the oligomer length and concentration. Right-handed phases are found only for oligomers shorter than 14 base pairs, and for the sequences having the transition to the N(∗) phase at concentration larger than 620 mg/mL. Our findings indicate that in short DNA, the intermolecular double-helical interactions switch the preferred liquid crystal handedness when the columns of stacked duplexes are forced at high concentrations to separations comparable to the DNA double-helix pitch, a regime still to be theoretically described.

Indexed as

Nucleic Acid ConformationBase SequenceChromatography, High Pressure LiquidDNAOligodeoxyribonucleotidesSpectrophotometry, UltravioletDNAOligodeoxyribonucleotides

Identifiers

PMID20876125
PMCPMC2955086
OpenAlexW2112331861

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.