Evidence map›Paper›PMID 20875427›Full record

ArticleJournal of molecular biology2010

The roles of stress-activated Sty1 and Gcn2 kinases and of the protooncoprotein homologue Int6/eIF3e in responses to endogenous oxidative stress during histidine starvation.

Naoki Nemoto, Tsuyoshi Udagawa, Takahiro Ohira, Li Jiang, Kouji Hirota, Caroline R M Wilkinson, Jürg Bähler, Nic Jones, Kunihiro Ohta, Ronald C Wek and 1 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Naoki NemotoMolecular, Cellular, and Developmental Biology Program, Division of Biology, Kansas State University, Manhattan, KS 66506, USA.
Tsuyoshi Udagawa
Takahiro Ohira
Li Jiang
Kouji Hirota
Caroline R M Wilkinson
Jürg Bähler
Nic Jones
Kunihiro Ohta
Ronald C Wek
Katsura Asano
Kansas State University · USIndiana University School of MedicineUniversity of Manchester · GBRIKEN · JPThe University of Tokyo · JPUniversity College London · GB

Funding

Mentoring CoreP20GM103418 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SUSAN J. BROWN · 2012 to 2026
$63.0M
UNDERSTANDING THE ROLE OF SMALL RNAS IN ARABIDOPSIS POLLEN DEVELOPMENTP20RR016475 · NCRR · UNIVERSITY OF KANSAS MEDICAL CENTER · PI ACKLEY, BRIAN DOUGLAS · 2001 to 2011
$38.1M
Metabolic stress responses andeIF2 kinase GCN2R01GM049164 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WEK, RONALD C · 1998 to 2019
$6.3M
HISRS-DOMAIN AND REGULATING GCN2 PROTEIN KINASER29GM049164 · NIGMS · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WEK, RONALD C · 1993 to 1997
–
Cancer Research UK 12485NCRR NIH HHS P20 RR016475NIGMS NIH HHS GM49164NIGMS NIH HHS GM67481NIGMS NIH HHS P20 GM103418NIGMS NIH HHS R01 GM049164
6 · The paper itself

Abstract

In fission yeast, Sty1 and Gcn2 are important protein kinases that regulate gene expression in response to amino acid starvation. The translation factor subunit Int6/eIF3e promotes Sty1-dependent response by increasing the abundance of Atf1, a transcription factor targeted by Sty1. While Gcn2 promotes expression of amino acid biosynthesis enzymes, the mechanism and function of Sty1 activation and Int6/eIF3e involvement during this nutrient stress are not understood. Here we show that mutants lacking sty1(+) or gcn2(+) display reduced viabilities during histidine depletion stress in a manner suppressible by the antioxidant N-acetyl cysteine, suggesting that these protein kinases function to alleviate endogenous oxidative damage generated during nutrient starvation. Int6/eIF3e also promotes cell viability by a mechanism involving the stimulation of Sty1 response to oxidative damage. In further support of these observations, microarray data suggest that, during histidine starvation, int6Δ increases the duration of Sty1-activated gene expression linked to oxidative stress due to the initial attenuation of Sty1-dependent transcription. Moreover, loss of gcn2 induces the expression of a new set of genes not activated in wild-type cells starved for histidine. These genes encode heatshock proteins, redox enzymes, and proteins involved in mitochondrial maintenance, in agreement with the idea that oxidative stress is imposed on gcn2Δ cells. Furthermore, early Sty1 activation promotes rapid Gcn2 activation on histidine starvation. These results suggest that Gcn2, Sty1, and Int6/eIF3e are functionally integrated and cooperate to respond to oxidative stress generated during histidine starvation.

Indexed as

Activating Transcription Factor 1AmitroleBase SequenceDNA, FungalEukaryotic Initiation Factor-3Feedback, PhysiologicalGene Expression Regulation, FungalGenes, FungalHistidineMAP Kinase Signaling SystemMitogen-Activated Protein KinasesModels, BiologicalMutationOxidative StressPhosphoproteinsProtein Serine-Threonine KinasesActivating Transcription Factor 1Amitroleatf1 protein, S pombeDNA, FungalEukaryotic Initiation Factor-3Gcn2 protein, S pombeHistidineMitogen-Activated Protein KinasesPhosphoproteinsProtein Serine-Threonine KinasesSchizosaccharomyces pombe Proteinssty1 protein, S pombe

Identifiers

PMID20875427
PMCPMC4378542
OpenAlexW2089017988

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.