Evidence map›Paper›PMID 20870963›Full record

ArticleGenetics2010

Natural variation, functional pleiotropy and transcriptional contexts of odorant binding protein genes in Drosophila melanogaster.

Gunjan H Arya, Allison L Weber, Ping Wang, Michael M Magwire, Yazmin L Serrano Negron, Trudy F C Mackay, Robert R H Anholt

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  6. eLife · 2024
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Sex, mating and repeatability ofRoyal Society open science · 2021
    Article
  13. Article
  14. Article
  15. TheG3 (Bethesda, Md.) · 2020
    Article
  16. Review
  17. Review
  18. Article
  19. The road less traveled: from genotype to phenotype in flies and humans.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Gunjan H AryaDepartment of Biology, W. M. Keck Center for Behavioral Biology, North Carolina State University, Raleigh, North Carolina 27695-7617, USA.
Allison L Weber
Ping Wang
Michael M Magwire
Yazmin L Serrano Negron
Trudy F C Mackay
Robert R H Anholt
W. M. Keck Foundation · USNorth Carolina State University · US

Funding

Molecular Genetics of Olfaction in DrosophiliaR01GM059469 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI ANHOLT, ROBERT R. H, MACKAY, TRUDY F. · 1999 to 2016
$5.8M
QUANTITATIVE TRAIT LOCI IN DROSOPHILAR01GM045146 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI ANHOLT, ROBERT R. H, MACKAY, TRUDY F. · 1991 to 2012
$5.1M
Systems Genetics of Oxidative Stress Resistance in DrosophilaF32GM089010 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI WEBER, ALLISON LYNN · 2009 to 2011
$151k
NIGMS NIH HHS 1F32-GM089010NIGMS NIH HHS F32 GM089010NIGMS NIH HHS R01 GM045146NIGMS NIH HHS R01-GM045146NIGMS NIH HHS R01 GM059469NIGMS NIH HHS R01-GM059469
6 · The paper itself

Abstract

How functional diversification affects the organization of the transcriptome is a central question in systems genetics. To explore this issue, we sequenced all six Odorant binding protein (Obp) genes located on the X chromosome, four of which occur as a cluster, in 219 inbred wild-derived lines of Drosophila melanogaster and tested for associations between genetic and phenotypic variation at the organismal and transcriptional level. We observed polymorphisms in Obp8a, Obp19a, Obp19b, and Obp19c associated with variation in olfactory responses and polymorphisms in Obp19d associated with variation in life span. We inferred the transcriptional context, or "niche," of each gene by identifying expression polymorphisms where genetic variation in these Obp genes was associated with variation in expression of transcripts genetically correlated to each Obp gene. All six Obp genes occupied a distinct transcriptional niche. Gene ontology enrichment analysis revealed associations of different Obp transcriptional niches with olfactory behavior, synaptic transmission, detection of signals regulating tissue development and apoptosis, postmating behavior and oviposition, and nutrient sensing. Our results show that diversification of the Obp family has organized distinct transcriptional niches that reflect their acquisition of additional functions.

Indexed as

AnimalsDrosophila melanogasterDrosophila ProteinsGenes, InsectGenetic VariationReceptors, OdorantTranscription, GeneticDrosophila Proteinsodorant-binding proteinReceptors, Odorant

Identifiers

PMID20870963
PMCPMC2998325
OpenAlexW2118593487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.