Evidence map›Paper›PMID 20870769›Full record

ArticleJournal of bacteriology2010

Stability and instability in the lysogenic state of phage lambda.

John W Little, Christine B Michalowski

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 56 citations in OpenAlex.

  1. Revisiting the life cycle of temperate phages.Nature reviews. Microbiology · 2026
    Review
  2. Extensive library ofMicrobiology spectrum · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. CRISPRpi: Inducing and Curing Prophage Using the CRISPR Interference.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  8. Article
  9. Article
  10. Disarm The Bacteria: What Temperate Phages Can Do.Current issues in molecular biology · 2023
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Optimality of the spontaneous prophage induction rate.Journal of theoretical biology · 2019
    Article
  17. The Prophages ofJournal of bacteriology · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

John W LittleDepartment of Molecular and Cellular Biology, University of Arizona, Tucson, AZ 85721, USA. jlittle@u.arizona.edu
Christine B Michalowski
University of Arizona · US

Funding

GENE REGULATION IN PHAGES LAMBDA AND HK022R01GM024178 · NIGMS · UNIVERSITY OF ARIZONA · PI LITTLE, JOHN W. · 1985 to 2010
$2.0M
NIGMS NIH HHS GM24178NIGMS NIH HHS R01 GM024178
6 · The paper itself

Abstract

Complex gene regulatory circuits exhibit emergent properties that are difficult to predict from the behavior of the components. One such property is the stability of regulatory states. Here we analyze the stability of the lysogenic state of phage λ. In this state, the virus maintains a stable association with the host, and the lytic functions of the virus are repressed by the viral CI repressor. This state readily switches to the lytic pathway when the host SOS system is induced. A low level of SOS-dependent switching occurs without an overt stimulus. We found that the intrinsic rate of switching to the lytic pathway, measured in a host lacking the SOS response, was almost undetectably low, probably less than 10(-8)/generation. We surmise that this low rate has not been selected directly during evolution but results from optimizing the rate of switching in a wild-type host over the natural range of SOS-inducing conditions. We also analyzed a mutant, λprm240, in which the promoter controlling CI expression was weakened, rendering lysogens unstable. Strikingly, the intrinsic stability of λprm240 lysogens depended markedly on the growth conditions; lysogens grown in minimal medium were nearly stable but switched at high rates when grown in rich medium. These effects on stability likely reflect corresponding effects on the strength of the prm240 promoter, measured in an uncoupled assay system. Several derivatives of λprm240 with altered stabilities were characterized. This mutant and its derivatives afford a model system for further analysis of stability.

Indexed as

Gene Expression Regulation, ViralLysogenyBacteriolysisBacteriophage lambdaCulture MediaMutationPromoter Regions, GeneticRepressor ProteinsViral Regulatory and Accessory ProteinsCulture Mediaphage repressor proteinsRepressor ProteinsViral Regulatory and Accessory Proteins

Identifiers

PMID20870769
PMCPMC2976446
OpenAlexW2143712193

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.