Evidence map›Paper›PMID 20870759›Full record

ArticleJournal of bacteriology2010

Resequencing the Mycobacterium avium subsp. paratuberculosis K10 genome: improved annotation and revised genome sequence.

James W Wynne, Torsten Seemann, Dieter M Bulach, Scott A Coutts, Adel M Talaat, Wojtek P Michalski

Abstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 45 citations in OpenAlex.

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  6. Complete Genome Sequence of OvineMicroorganisms · 2020
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  7. Genetic Diversity AmongFrontiers in microbiology · 2020
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  8. Genotyping methods and molecular epidemiology ofInternational journal of veterinary science and medicine · 2018
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  9. Identification ofCanadian journal of veterinary research = Revue canadienne de recherche veterinaire · 2017
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  10. Pathogenesis, Molecular Genetics, and Genomics ofFrontiers in veterinary science · 2017
    Review
  11. Article
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  15. Avian Mycobacteriosis: Still Existing Threat to Humans.BioMed research international · 2016
    Review
  16. Examination ofPeerJ · 2016
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  18. Review
  19. Article
  20. Controlling Johne's disease: vaccination is the way forward.Frontiers in cellular and infection microbiology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

James W WynneCSIRO Livestock Industries, Australian Animal Health Laboratory, East Geelong, Victoria, Australia. james.wynne@csiro.au
Torsten Seemann
Dieter M Bulach
Scott A Coutts
Adel M Talaat
Wojtek P Michalski
Australian Centre for Disease Preparedness · AUCommonwealth Scientific and Industrial Research Organisation · AUMelbourne Bioinformatics · AUMonash University · AUUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report the resequencing and revised annotation of the Mycobacterium avium subsp. paratuberculosis K10 genome. A total of 90 single-nucleotide errors and a 51-bp indel in the original K10 genome were corrected, and the whole genome annotation was revised. Correction of these sequencing errors resulted in 28 frameshift alterations. The amended genome sequence is accessible via the supplemental section of study SRR060191 in the NCBI Sequence Read Archive and will serve as a valuable reference genome for future studies.

Indexed as

Genome, BacterialDNA, BacterialMolecular Sequence DataMycobacterium avium subsp. paratuberculosisSequence Analysis, DNADNA, Bacterial

Identifiers

PMID20870759
PMCPMC2981200
OpenAlexW2108817379

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.