Evidence map›Paper›PMID 20868271›Full record

ArticleThe Journal of infectious diseases2010

Enhanced molecular typing of treponema pallidum: geographical distribution of strain types and association with neurosyphilis.

Christina M Marra, Sharon K Sahi, Lauren C Tantalo, Charmie Godornes, Tara Reid, Frieda Behets, Anne Rompalo, Jeffrey D Klausner, Yue Ping Yin, Fiona Mulcahy and 3 more

Abstract readEvaluation Study
In one paragraph

Article in The Journal of infectious diseases, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Article
  6. Article
  7. Article
  8. Formal description ofInternational journal of systematic and evolutionary microbiology · 2026
    Article
  9. Article
  10. Detection ofMicrobiology spectrum · 2026
    Article
  11. Reported Neurologic Manifestations Among Persons With Syphilis by Stage of Infection-12 States, 2019-2022.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2026
    Article
  12. Infection and immunity · 2026
    Review
  13. Frontiers in immunology · 2026
    Article
  14. Observational
  15. Article
  16. Review
  17. Article
  18. Molecular investigation ofMicrobiology spectrum · 2024
    Article
  19. Article
  20. Typing of Treponema pallidum in a Brazilian sample and follow-up of treatment using molecular assays.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article

35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Christina M MarraDepartments of Neurology, University of Washington School of Medicine, Seattle, Washington 98104‐2499, USA.
Sharon K Sahi
Lauren C Tantalo
Charmie Godornes
Tara Reid
Frieda Behets
Anne Rompalo
Jeffrey D Klausner
Yue Ping Yin
Fiona Mulcahy
Matthew R Golden
Arturo Centurion-Lara
Sheila A Lukehart

Funding

VENEREAL DISEASET32AI007140 · NIAID · UNIVERSITY OF WASHINGTON · PI Julia Cook Dombrowski · 1985 to 2026
$19.4M
PERSISTENCE OF CNS T PALLIDUM IN HIV INFECTIONR01NS034235 · NINDS · UNIVERSITY OF WASHINGTON · PI MARRA, CHRISTINA M · 1996 to 2018
$7.0M
TREPONEMA PALLIDUM PATHOGENESIS ASSOCIATED MOLECULESR01AI042143 · NIAID · UNIVERSITY OF WASHINGTON · PI LUKEHART, SHEILA A. · 1998 to 2015
$5.4M
Project 4: Antigenic variation of TprKR01AI063940 · NIAID · UNIVERSITY OF WASHINGTON · PI LUKEHART, SHEILA A. · 2004 to 2013
$3.3M
SEXUALLY TRANSMITTED DISEASES CLINICAL TRIALS UNITN01AI075329 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · 1997 to 2003
$346k
NIAID NIH HHS AI42143NIAID NIH HHS AI63940NIAID NIH HHS N01 AI040073NIAID NIH HHS N01 AI075329NIAID NIH HHS N01‐AI‐40073NIAID NIH HHS N01‐AI‐75329NIAID NIH HHS R01 AI042143NIAID NIH HHS R01 AI063940NIAID NIH HHS T32 AI007140NINDS NIH HHS NS34235NINDS NIH HHS R01 NS034235
6 · The paper itself

Abstract

backgroundStrain typing is a tool for determining the diversity and epidemiology of infections.

methodsTreponema pallidum DNA was isolated from 158 patients with syphilis from the United States, China, Ireland, and Madagascar and from 15 T. pallidum isolates. Six typing targets were assessed: (1) the number of 60‐bp repeats in the acidic repeat protein gene, (2) restriction fragment length polymorphism (RFLP) analysis of T. pallidum repeat (tpr) subfamily II genes, (3) RFLP analysis of the tprC gene, (4) determination of tprD allele in the tprD gene locus, (5) the presence of a 51‐bp insertion between tp0126 and tp0127, and (6) sequence analysis of an 84‐bp region of tp0548. The combination of targets 1 and 2 comprises the Centers for Disease Control and Prevention (CDC) T. pallidum subtyping method.

resultsAdding sequence analysis of tp0548 to the CDC method yielded the most discriminating typing system. Twenty‐five strain types were identified and designated as "CDC subtype/tp0548 sequence type." Type 14d/f was found in samples from 5 of 6 locations. In Seattle, Washington, strain types changed from 1999 through 2008 (P < .001). Twenty‐one (50%) of 42 patients infected with type 14d/f had neurosyphilis compared with 10 (24%) of 41 patients infected with any of the other types combined (P = .02).

conclusionWe describe an enhanced T. pallidum strain typing system that shows biological and clinical relevance.

Indexed as

Bacterial Typing TechniquesDNA FingerprintingPolymorphism, GeneticBacterial ProteinsChinaDNA, BacterialFemaleHumansIrelandMadagascarMaleMolecular EpidemiologySequence Analysis, DNASyphilisTreponema pallidumUnited StatesBacterial ProteinsDNA, Bacterial

Identifiers

PMID20868271
PMCPMC3114648

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.