Evidence map›Paper›PMID 20865327›Full record

ArticleMolecular biology reports2011

Cloning and characterization of the 5'-flanking region of the pig AgRP gene.

Fei Ling, Tao Wang, Liqiong Wei, Xiaoping Zhu, Yaosheng Chen, Jiaqi Li, Zongwu Zhang, Hongli Du, Xiaoning Wang, Jufang Wang

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Article in Molecular biology reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Characteristics of theAnimals : an open access journal from MDPI · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Fei LingSchool of Bioscience and Bioengineering, South China University of Technology, Guangzhou, 510006, People's Republic of China.
Tao Wang
Liqiong Wei
Xiaoping Zhu
Yaosheng Chen
Jiaqi Li
Zongwu Zhang
Hongli Du
Xiaoning Wang
Jufang Wang
South China University of Technology · CNSouth China Agricultural University · CNSun Yat-sen University · CNBioscience (China) · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Agouti-related peptide (AgRP), a brain neuropeptide generated by AgRP/neuropeptide Y (NPY) neurons, plays a vital role in the hypothalamic regulation of energy homeostasis. RT-PCR and real-time PCR were carried out in various tissues to detect the AgRP expression pattern in pigs. Our RT-PCR results showed that the pig AgRP gene was ubiquitously expressed in all examined tissues including heart, liver, spleen, lung, kidney, stomach, bladder, m. longissimus, belly fat, brain, large intestine, lymph, back fat, skin, and hypothalamus. Real-time quantitative PCR experiments revealed that it is in the hypothalamus with the highest expression of AgRP both in adult Lantang and Landrace pigs compared to the back fat and m.longissimus muscle and the cDNA level of AgRP in the hypothalamus of adult Chinese indigenous Lantang pig (fat-type) is significantly higher than that of Landrace pig (lean-type). To understand the regulation of the pig AgRP gene, the 5'-flanking region was isolated from a pig bacterial artificial chromosome library and used in a luciferase reporter assay. A positive cis-acting element for efficient AgRP expression was identified at nucleotides -501 to -479, by 5'-serial deletion of the promoter. Electrophoretic mobility-shift assays (EMSA) with competing oligonucleotides revealed that the critical region contained a cis-acting element for Neurogenic Differentiation (NeuroD), which is a member of the NeuroD family of basic-helix-loop-helix transcription factors. This element has not been reported in human or mouse AgRP genes. Our results indicated that NeuroD might be an essential regulatory factor for transcription of pig AgRP, providing an important clue about energy homeostasis regulation in the porcine and human brain.

Indexed as

5' Flanking RegionAgouti-Related ProteinAnimalsBasic Helix-Loop-Helix ProteinsChromosomes, Artificial, BacterialCloning, MolecularDNA PrimersElectrophoretic Mobility Shift AssayEnergy MetabolismGene Expression ProfilingLuciferasesNerve Tissue ProteinsOligonucleotidesPolymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSpecies SpecificityAgouti-Related ProteinBasic Helix-Loop-Helix ProteinsDNA PrimersLuciferasesNerve Tissue ProteinsNeurogenic differentiation factor 1Oligonucleotides

Identifiers

PMID20865327
OpenAlexW2038945795

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.