Evidence map›Paper›PMID 20865150›Full record

ArticlePloS one2010

Understanding the role of the Josephin domain in the PolyUb binding and cleavage properties of ataxin-3.

Giuseppe Nicastro, Sokol V Todi, Ezgi Karaca, Alexandre M J J Bonvin, Henry L Paulson, Annalisa Pastore

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 64 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Giuseppe NicastroNational Institute for Medical Research, Medical Research Council, London, United Kingdom.
Sokol V Todi
Ezgi Karaca
Alexandre M J J Bonvin
Henry L Paulson
Annalisa Pastore
Medical Research Council · GBMichigan United · USUtrecht University · NL

Funding

Mechanisms of Polyglutamine NeurodegenerationR01NS038712 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PAULSON, HENRY L · 2000 to 2019
$8.1M
Posttranslational Modification of Deubiquitinating Enzymes in NeurodegenerationK99NS064097 · NINDS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI TODI, SOKOL · 2009 to 2010
$173k
Medical Research Council MC_U117533887Medical Research Council MC_U117584256NINDS NIH HHS 1K99NS064097NINDS NIH HHS K99 NS064097NINDS NIH HHS R01 NS038712NINDS NIH HHS R01 NS38712
6 · The paper itself

Abstract

Ataxin-3, the disease protein in the neurodegenerative disorder Spinocerebellar Ataxia Type 3 or Machado Joseph disease, is a cysteine protease implicated in the ubiquitin proteasome pathway. It contains multiple ubiquitin binding sites through which it anchors polyubiquitin chains of different linkages that are then cleaved by the N-terminal catalytic (Josephin) domain. The properties of the ubiquitin interacting motifs (UIMs) in the C-terminus of ataxin-3 are well established. Very little is known, however, about how two recently identified ubiquitin-binding sites in the Josephin domain contribute to ubiquitin chain binding and cleavage. In the current study, we sought to define the specific contribution of the Josephin domain to the catalytic properties of ataxin-3 and assess how the topology and affinity of these binding sites modulate ataxin-3 activity. Using NMR we modeled the structure of diUb/Josephin complexes and showed that linkage preferences are imposed by the topology of the two binding sites. Enzymatic studies further helped us to determine a precise hierarchy between the sites. We establish that the structure of Josephin dictates specificity for K48-linked chains. Site 1, which is close to the active site, is indispensable for cleavage. Our studies open the way to understand better the cellular function of ataxin-3 and its link to pathology.

Indexed as

Ataxin-3Binding SitesHumansMachado-Joseph DiseaseMolecular ConformationNerve Tissue ProteinsNuclear ProteinsPolyubiquitinProtein BindingProtein Processing, Post-TranslationalProtein Structure, TertiaryRepressor ProteinsAtaxin-3ATXN3 protein, humanNerve Tissue ProteinsNuclear ProteinsPolyubiquitinRepressor Proteins

Identifiers

PMID20865150
PMCPMC2928749
OpenAlexW1992436832

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.