Evidence map›Paper›PMID 20865006›Full record

ArticleMolecular systems biology2010

Understanding the physiology of Lactobacillus plantarum at zero growth.

Philippe Goffin, Bert van de Bunt, Marco Giovane, Johan H J Leveau, Sachie Höppener-Ogawa, Bas Teusink, Jeroen Hugenholtz

Abstract read
In one paragraph

Article in Molecular systems biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. An alternative resource allocation strategy in the chemolithoautotrophic archaeonProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Review
  11. Article
  12. Article
  13. Extracellular Vesicles Derived fromExperimental neurobiology · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Constraint-based modeling in microbial food biotechnology.Biochemical Society transactions · 2018
    Review
  19. Systems biology of lactic acid bacteria: For food and thought.Current opinion in systems biology · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Philippe GoffinKluyver Centre for Genomics of Industrial Fermentations, Delft, The Netherlands.
Bert van de Bunt
Marco Giovane
Johan H J Leveau
Sachie Höppener-Ogawa
Bas Teusink
Jeroen Hugenholtz

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Situations of extremely low substrate availability, resulting in slow growth, are common in natural environments. To mimic these conditions, Lactobacillus plantarum was grown in a carbon-limited retentostat with complete biomass retention. The physiology of extremely slow-growing L. plantarum--as studied by genome-scale modeling and transcriptomics--was fundamentally different from that of stationary-phase cells. Stress resistance mechanisms were not massively induced during transition to extremely slow growth. The energy-generating metabolism was remarkably stable and remained largely based on the conversion of glucose to lactate. The combination of metabolic and transcriptomic analyses revealed behaviors involved in interactions with the environment, more particularly with plants: production of plant hormones or precursors thereof, and preparedness for the utilization of plant-derived substrates. Accordingly, the production of compounds interfering with plant root development was demonstrated in slow-growing L. plantarum. Thus, conditions of slow growth and limited substrate availability seem to trigger a plant environment-like response, even in the absence of plant-derived material, suggesting that this might constitute an intrinsic behavior in L. plantarum.

Indexed as

Bacterial Physiological PhenomenaAmino AcidsBiomassCarbonEnergy MetabolismGlucoseHormonesKetoglutaric AcidsLactic AcidLactiplantibacillus plantarumModels, BiologicalTranscription, GeneticAmino AcidsCarbonGlucoseHormonesKetoglutaric AcidsLactic Acid

Identifiers

PMID20865006
PMCPMC2964122

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.