ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2010
Conservation, rearrangement, and deletion of gene pairs during the evolution of four grass genomes.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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Who cites it
6 citing papers in PubMed.
- RUBY-BD: a highly efficient visual reporter system for assessing bidirectional promoter activity.Planta · 2026Article
- Plant Defenses Against Pests Driven by a Bidirectional Promoter.Frontiers in plant science · 2019Article
- Genetic variability of the activity of bidirectional promoters: a pilot study in bovine muscle.DNA research : an international journal for rapid publication of reports on genes and genomes · 2017Article
- Differential genomic arrangements in Caryophyllales through deep transcriptome sequencing of A. hypochondriacus.PloS one · 2017Article
- Spatial features for Escherichia coli genome organization.BMC genomics · 2015Article
- Evolutionary expansion and functional diversification of oligopeptide transporter gene family in rice.Rice (New York, N.Y.) · 2012Article
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Authors and funding
2 authors.
Funding
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Abstract
Gene order and content differ among homologous regions of closely related genomes. Similarities in the expression profiles of physically adjacent genes suggest that the proper functioning of these genes depends on maintaining a specific position relative to each other. To better understand the results of the interaction of these two genomic forces, convergent, divergent, and tandem gene pairs in rice and sorghum, as well as their homologs in rice, sorghum, maize, and Brachypodium were analyzed. The status of each pair in all four species: whether it was conserved, inverted, rearranged, or missing homologs was determined. We observed that divergent gene pairs had lower rates of conservation than convergent or tandem pairs, but higher rates of rearranged pairs and missing homologs in maize than in any other species. We also discovered species-specific gene pairs in rice and sorghum. In rice, gene pairs with strongly correlated expression levels were conserved significantly more often than those with little or no correlation. We assigned three types of gene pair to one of 14 possible evolutionary history categories to uncover their evolutionary dynamics during the evolution of grass genomes.
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Registered trials
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