ArticleNucleic acids research2011
GreenPhylDB v2.0: comparative and functional genomics in plants.
Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
60 citing papers in PubMed.
- Pan-omics insights into abiotic stress responses: bridging functional genomics and precision crop breeding.Functional & integrative genomics · 2025Review
- Genomic and Bioinformatic Resources for Perennial Fruit Species.Current genomics · 2022Review
- GreenPhylDB v5: a comparative pangenomic database for plant genomes.Nucleic acids research · 2021Article
- Toward Integrated Multi-Omics Intervention: Rice Trait Improvement and Stress Management.Frontiers in plant science · 2021Review
- Infrastructures of systems biology that facilitate functional genomic study in rice.Rice (New York, N.Y.) · 2019Review
- Three New Genome Assemblies Support a Rapid Radiation in Musa acuminata (Wild Banana).Genome biology and evolution · 2018Article
- Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine.BMC bioinformatics · 2018Article
- Plant genome and transcriptome annotations: from misconceptions to simple solutions.Briefings in bioinformatics · 2018Article
- Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion.Frontiers in plant science · 2018Article
- A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.).BMC genomics · 2017Article
- Diversification of Root Hair Development Genes in Vascular Plants.Plant physiology · 2017Article
- Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics.GigaScience · 2017Article
- Transcriptologs: A Transcriptome-Based Approach to Predict Orthology Relationships.Bioinformatics and biology insights · 2017Article
- MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data.Database : the journal of biological databases and curation · 2017Article
- New Insights on Leucine-Rich Repeats Receptor-Like Kinase Orthologous Relationships in Angiosperms.Frontiers in plant science · 2017Article
- Evolutionary Analyses of GRAS Transcription Factors in Angiosperms.Frontiers in plant science · 2017Article
- Computational Tools for Genomic Studies in Plants.Current genomics · 2016Article
- Bioinformatics Approach in Plant Genomic Research.Current genomics · 2016Article
- Integration of decoy domains derived from protein targets of pathogen effectors into plant immune receptors is widespread.The New phytologist · 2016Article
- expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform.Plant physiology · 2016Article
Corrections and comments
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Authors and funding
9 authors.
Funding
Abstract
GreenPhylDB is a database designed for comparative and functional genomics based on complete genomes. Version 2 now contains sixteen full genomes of members of the plantae kingdom, ranging from algae to angiosperms, automatically clustered into gene families. Gene families are manually annotated and then analyzed phylogenetically in order to elucidate orthologous and paralogous relationships. The database offers various lists of gene families including plant, phylum and species specific gene families. For each gene cluster or gene family, easy access to gene composition, protein domains, publications, external links and orthologous gene predictions is provided. Web interfaces have been further developed to improve the navigation through information related to gene families. New analysis tools are also available, such as a gene family ontology browser that facilitates exploration. GreenPhylDB is a component of the South Green Bioinformatics Platform (http://southgreen.cirad.fr/) and is accessible at http://greenphyl.cirad.fr. It enables comparative genomics in a broad taxonomy context to enhance the understanding of evolutionary processes and thus tends to speed up gene discovery.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.