Evidence map›Paper›PMID 20863863›Full record

ArticleVirus research2011

Characterization of Durham virus, a novel rhabdovirus that encodes both a C and SH protein.

A B Allison, G Palacios, A Travassos da Rosa, V L Popov, L Lu, S Y Xiao, K DeToy, T Briese, W I Lipkin, M K Keel and 3 more

Abstract read
In one paragraph

Article in Virus research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Small hydrophobic (SH) proteins ofJournal of virology · 2024
    Review
  3. Article
  4. Article
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  18. Rhabdovirus accessory genes.Virus research · 2011
    Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

A B AllisonSoutheastern Cooperative Wildlife Disease Study, College of Veterinary Medicine, University of Georgia, Athens, GA 30602, United States. allisona@uga.edu
G Palacios
A Travassos da Rosa
V L Popov
L Lu
S Y Xiao
K DeToy
T Briese
W I Lipkin
M K Keel
D E Stallknecht
G R Bishop
R B Tesh
Columbia University · USThe University of Texas Medical Branch at Galveston · USNational Audubon Society · USUniversity of Chicago · USUniversity of Georgia · US

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LIPKIN, W. IAN · 2003 to 2014
$100.8M
A Staged Strategy for Virus Identification and DiscoveryR01AI051292 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI LIPKIN, W. IAN · 2002 to 2005
$2.0M
U.S. Based Collaboration in Emerging Viral and Prion Diseases-26625489N01AI025489 · NIAID · University of Texas Medical Branch · 2004 to 2004
–
NIAID NIH HHS AI051292NIAID NIH HHS AI57158NIAID NIH HHS N01 AI025489NIAID NIH HHS N01-AI25489NIAID NIH HHS R01 AI051292NIAID NIH HHS U54 AI057158
6 · The paper itself

Abstract

The family Rhabdoviridae is a diverse group of non-segmented, negative-sense RNA viruses that are distributed worldwide and infect a wide range of hosts including vertebrates, invertebrates, and plants. Of the 114 currently recognized vertebrate rhabdoviruses, relatively few have been well characterized at both the antigenic and genetic level; hence, the phylogenetic relationships between many of the vertebrate rhabdoviruses remain unknown. The present report describes a novel rhabdovirus isolated from the brain of a moribund American coot (Fulica americana) that exhibited neurological signs when found in Durham County, North Carolina, in 2005. Antigenic characterization of the virus revealed that it was serologically unrelated to 68 other known vertebrate rhabdoviruses. Genomic sequencing of the virus indicated that it shared the highest identity to Tupaia rhabdovirus (TUPV), and as only previously observed in TUPV, the genome encoded a putative C protein in an overlapping open reading frame (ORF) of the phosphoprotein gene and a small hydrophobic (SH) protein located in a novel ORF between the matrix and glycoprotein genes. Phylogenetic analysis of partial amino acid sequences of the nucleoprotein and polymerase protein indicated that, in addition to TUPV, the virus was most closely related to avian and small mammal rhabdoviruses from Africa and North America. In this report, we present the morphological, pathological, antigenic, and genetic characterization of the new virus, tentatively named Durham virus (DURV), and discuss its potential evolutionary relationship to other vertebrate rhabdoviruses.

Indexed as

AnimalsAnimals, NewbornAnimal StructuresBirdsBrainCluster AnalysisGene OrderHistocytochemistryImmunohistochemistryMiceMice, Inbred ICRMicroscopyMicroscopy, Electron, TransmissionMolecular Sequence DataNorth CarolinaPhylogenyRNA, ViralViral Proteins

Identifiers

PMID20863863
PMCPMC3010432
OpenAlexW1967773299

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.