Evidence map›Paper›PMID 20863778›Full record

ArticleCancer epidemiology2011

Association studies of excision repair cross-complementation group 1 (ERCC1) haplotypes with lung and head and neck cancer risk in a Caucasian population.

Nathan R Jones, Thomas E Spratt, Arthur S Berg, Joshua E Muscat, Philip Lazarus, Carla J Gallagher

Open access · greenAbstract read
In one paragraph

Article in Cancer epidemiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Association of ERCC1 polymorphisms (rs3212986 and rs11615) with the risk of head and neck carcinomas based on case-control studies.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2015
    Article
  5. Article
  6. Article
  7. Single-nucleotide polymorphisms in nucleotide excision repair genes, cigarette smoking, and the risk of head and neck cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2013
    Article
  8. ERCC1 and XRCC1 as biomarkers for lung and head and neck cancer.Pharmacogenomics and personalized medicine · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nathan R JonesMolecular Epidemiology and Cancer Control Programs, Penn State Hershey Cancer Institute, Penn State College of Medicine, 500 University Drive, Hershey, PA, USA.
Thomas E Spratt
Arthur S Berg
Joshua E Muscat
Philip Lazarus
Carla J Gallagher
Penn State Milton S. Hershey Medical Center · USPennsylvania State University · US

Funding

UDP GLUCURONOSYLTRANSFERASES, DETOXIFICATION OF NNKP01CA068384 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI LAZARUS, PHILIP · 1995 to 2005
$8.5M
UDPGLUCURONOSYLTRANSFERASE GENOTYPE AND ORAL CANCER RISKR01DE013158 · NIDCR · UNIVERSITY OF SOUTH FLORIDA · PI LAZARUS, PHILIP · 2000 to 2011
$3.6M
UDP-glucuronosyltransferase genes and gender-differences in lung cancer riskR00CA131477 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI GALLAGHER, CARLA J. · 2010 to 2012
$730k
Epidemiology of protein glutathiolationK07CA104231 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI MUSCAT, JOSHUA E · 2005 to 2009
$681k
UDP-glucuronosyltransferase genes and gender-differences in lung cancer riskK99CA131477 · NCI · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI GALLAGHER, CARLA J. · 2008 to 2009
$272k
NCI NIH HHS K07 CA104231NCI NIH HHS K07-CA 104231NCI NIH HHS K99 CA131477NCI NIH HHS K99-CA 131477NCI NIH HHS P01 CA068384NCI NIH HHS P01-CA 68384NCI NIH HHS R00 CA131477NIDCR NIH HHS R01 DE013158NIDCR NIH HHS R01-DE13158
6 · The paper itself

Abstract

backgroundThe formation of bulky DNA adducts caused by diol epoxide derivatives of polycyclic aromatic hydrocarbons has been associated with tobacco-induced cancers, and inefficient repair of such adducts by the nucleotide excision repair (NER) system has been linked to increased risk of tobacco-induced lung and head and neck (H&N) cancers. The human excision repair cross-complementation group 1 (ERCC1) protein is essential for a functional NER system and genetic variation in ERCC1 may contribute to impaired DNA repair capacity and increased lung and H&N cancer risk.

methodsIn order to comprehensively capture common genetic variation in the ERCC1 gene, Caucasian data from the International HapMap project was used to assess linkage disequilibrium and choose four tagSNPs (rs1319052, rs3212955, rs3212948, and rs735482) in the ERCC1 gene to genotype 452 lung cancer cases, 175 H&N cancer cases, and 790 healthy controls. Haplotypes were estimated using expectation maximization (EM) algorithm, and haplotype association with cancer was investigated using Haplo.stats software adjusting for known covariates.

resultsThe genotype and haplotype frequencies matched previous estimates from Caucasians. There was no significant difference in the prevalence of rs1319052, rs3212955, rs3212948, and rs735482 when comparing lung or H&N cancer cases with controls (p-values>0.05). Similarly, there was no association between ERCC1 haplotypes and lung or H&N cancer susceptibility in this Caucasian population (p-values>0.05). No associations were found when stratifying lung cancer cases by histology, sex, smoking status, or smoking intensity.

conclusionsThis study suggests that ERCC1 polymorphisms and haplotypes do not play a role in lung and H&N cancer susceptibility in Caucasians.

Indexed as

Case-Control StudiesDNA-Binding ProteinsDNA RepairEndonucleasesFemaleGenetic Predisposition to DiseaseGenotypeHaplotypesHead and Neck NeoplasmsHumansLung NeoplasmsMaleMiddle AgedPolymorphism, Single NucleotideSmokingWhite PeopleDNA-Binding ProteinsEndonucleasesERCC1 protein, human

Identifiers

PMID20863778
PMCPMC3081042
OpenAlexW2134637711

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.