ArticleTrends in ecology & evolution2010
Three roads diverged? Routes to phylogeographic inference.
Article in Trends in ecology & evolution, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.
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Who cites it
42 citing papers in PubMed.
- Bayesian Inference of Pathogen Phylogeography using the Structured Coalescent Model.PLoS computational biology · 2025Article
- Climate change alters the future of natural floristic regions of deep evolutionary origins.Nature communications · 2024Article
- Maximum likelihood phylogeographic inference of cell motility and cell division from spatial lineage tracing data.Bioinformatics (Oxford, England) · 2024Article
- Distinguishing imported cases from locally acquired cases within a geographically limited genomic sample of an infectious disease.Bioinformatics (Oxford, England) · 2023Article
- Bayesian Inference of Clonal Expansions in a Dated Phylogeny.Systematic biology · 2022Article
- Phylogeography and cryptic species structure of a locally adapted parasite in New Zealand.Molecular ecology · 2022Article
- The rates of global bacterial and archaeal dispersal.The ISME journal · 2022Article
- Accounting for spatial sampling patterns in Bayesian phylogeography.Proceedings of the National Academy of Sciences of the United States of America · 2021Article
- Article
- Emergence of an early SARS-CoV-2 epidemic in the United States.medRxiv : the preprint server for health sciences · 2021Article
- Carnivore Contact: A Species Fracture Zone Delineated Amongst Genetically Structured North American Marten Populations (Frontiers in genetics · 2020Article
- HIV Rebound Is Predominantly Fueled by Genetically Identical Viral Expansions from Diverse Reservoirs.Cell host & microbe · 2019Article
- Identifying the patterns and drivers ofVirus evolution · 2019Article
- On the importance of negative controls in viral landscape phylogeography.Virus evolution · 2018Article
- A biologist's guide to Bayesian phylogenetic analysis.Nature ecology & evolution · 2017Review
- Wandering behaviour prevents inter and intra oceanic speciation in a coastal pelagic fish.Scientific reports · 2017Article
- A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution.Systematic biology · 2017Article
- The epidemic dynamics of hepatitis C virus subtypes 4a and 4d in Saudi Arabia.Scientific reports · 2017Article
- Emerging Concepts of Data Integration in Pathogen Phylodynamics.Systematic biology · 2017Review
- Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral".Advances in virus research · 2017Article
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Authors and funding
3 authors.
Funding
Abstract
Phylogeographic methods facilitate inference of the geographical history of genetic lineages. Recent examples explore human migration and the origins of viral pandemics. There is longstanding disagreement over the use and validity of certain phylogeographic inference methodologies. In this paper, we highlight three distinct frameworks for phylogeographic inference to give a taste of this disagreement. Each of the three approaches presents a different viewpoint on phylogeography, most fundamentally on how we view the relationship between the inferred history of a sample and the history of the population the sample is embedded in. Satisfactory resolution of this relationship between history of the tree and history of the population remains a challenge for all but the most trivial models of phylogeographic processes. Intriguingly, we believe that some recent methods that entirely avoid inference about the history of the population will eventually help to reach a resolution.
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Registered trials
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