Evidence map›Paper›PMID 20861858›Full record

SynthesisGenes and immunity2011

Association of EBF1, FAM167A(C8orf13)-BLK and TNFSF4 gene variants with primary Sjögren's syndrome.

G Nordmark, G Kristjansdottir, E Theander, S Appel, P Eriksson, L Vasaitis, M Kvarnström, N Delaleu, P Lundmark, A Lundmark and 15 more

Abstract readMeta-Analysis
PubMed Publisher
In one paragraph

Synthesis in Genes and immunity, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 3 pooled it
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 3 syntheses or guidelines pooled it, 129 citations in OpenAlex.

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  20. Genetics and epigenetics in primary Sjögren's syndrome.Rheumatology (Oxford, England) · 2021
    Review

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 7 institutions in 2 countries.

G NordmarkSection of Rheumatology, Department of Medical Sciences, Uppsala University, Uppsala, Sweden. Gunnel.Nordmark@medsci.uu.se
G Kristjansdottir
E Theander
S Appel
P Eriksson
L Vasaitis
M Kvarnström
N Delaleu
P Lundmark
A Lundmark
C Sjöwall
J G Brun
M V Jonsson
E Harboe
L G Gøransson
S J Johnsen
P Söderkvist
M-L Eloranta
G Alm
E Baecklund
M Wahren-Herlenius
R Omdal
L Rönnblom
R Jonsson
A-C Syvänen
Uppsala University · SEUniversity of Bergen · NOStavanger University Hospital · NOLinköping University · SEKarolinska Institutet · SELund University · SESwedish University of Agricultural Sciences · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We performed a candidate gene association study in 540 patients with primary Sjögren's Syndrome (SS) from Sweden (n=344) and Norway (n=196) and 532 controls (n=319 Swedish, n=213 Norwegian). A total of 1139 single-nucleotide polymorphisms (SNPs) in 84 genes were analyzed. In the meta-analysis of the Swedish and Norwegian cohorts, we found high signals for association between primary SS and SNPs in three gene loci, not previously associated with primary SS. These are the early B-cell factor 1 (EBF1) gene, P=9.9 × 10(-5), OR 1.68, the family with sequence similarity 167 member A-B-lymphoid tyrosine kinase (FAM167A-BLK) locus, P=4.7 × 10(-4), OR 1.37 and the tumor necrosis factor superfamily (TNFSF4=Ox40L) gene, P=7.4 × 10(-4), OR 1.34. We also confirmed the association between primary SS and the IRF5/TNPO3 locus and the STAT4 gene. We found no association between the SNPs in these five genes and the presence of anti-SSA/anti-SSB antibodies. EBF1, BLK and TNFSF4 are all involved in B-cell differentiation and activation, and we conclude that polymorphisms in several susceptibility genes in the immune system contribute to the pathogenesis of primary SS.

Indexed as

B-LymphocytesCase-Control StudiesCohort StudiesFemaleGenetic Predisposition to DiseaseHumansInterferon Regulatory FactorsInterleukin-6Lymphocyte ActivationMaleMiddle AgedNorwayOX40 LigandPolymorphism, Single NucleotideProtein-Tyrosine KinasesSjogren's SyndromeEBF1 protein, humanInterferon Regulatory FactorsInterleukin-6IRF5 protein, humanOX40 LigandProtein-Tyrosine KinasesSTAT4 protein, humanSTAT4 Transcription FactorTNFSF4 protein, humanTrans-Activators

Identifiers

PMID20861858
OpenAlexW2154656443

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.