ArticleBMC genomics2010
The first-generation Daphnia magna linkage map.
Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
23 citing papers in PubMed, 64 citations in OpenAlex.
- Article
- Cloning and functional analysis of the molting gene CYP302A1 of Daphnia sinensis.Frontiers in zoology · 2023Article
- Genome Assembly of a Relict Arabian Species ofInternational journal of molecular sciences · 2023Article
- Review
- Population connectivity, dispersal, and swimming behavior inEcology and evolution · 2021Article
- A Crab Is Not a Fish: Unique Aspects of the Crustacean Endocrine System and Considerations for Endocrine Toxicology.Frontiers in endocrinology · 2021Review
- Identification of Mitochondrial DNA (NUMTs) in the Nuclear Genome ofInternational journal of molecular sciences · 2020Article
- Host genotype-specific microbiota do not influence the susceptibility of D. magna to a bacterial pathogen.Scientific reports · 2018Article
- Transition from Environmental to Partial Genetic Sex Determination in Daphnia through the Evolution of a Female-Determining Incipient W Chromosome.Molecular biology and evolution · 2017Article
- A high-density genetic map reveals variation in recombination rate across the genome of Daphnia magna.BMC genetics · 2016Article
- Male meiosis in Crustacea: synapsis, recombination, epigenetics and fertility in Daphnia magna.Chromosoma · 2016Article
- Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.Scientific data · 2016Article
- Article
- Genetic architecture of resistance in Daphnia hosts against two species of host-specific parasites.Heredity · 2015Article
- Water fleas require microbiota for survival, growth and reproduction.The ISME journal · 2015Article
- An SNP-based second-generation genetic map of Daphnia magna and its application to QTL analysis of phenotypic traits.BMC genomics · 2014Article
- A RAD-based linkage map and comparative genomics in the gudgeons (genus Gnathopogon, Cyprinidae).BMC genomics · 2013Article
- A first AFLP-based genetic linkage map for brine shrimp Artemia franciscana and its application in mapping the sex locus.PloS one · 2013Article
- Resistance to a bacterial parasite in the crustacean Daphnia magna shows Mendelian segregation with dominance.Heredity · 2012Article
- Single nucleotide polymorphism discovery from expressed sequence tags in the waterflea Daphnia magna.BMC genomics · 2011Article
Corrections and comments
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Authors and funding
5 authors at 3 institutions in 3 countries.
Funding
Abstract
backgroundDaphnia magna is a well-established model species in ecotoxicology, ecology and evolution. Several new genomics tools are presently under development for this species; among them, a linkage map is a first requirement for estimating the genetic background of phenotypic traits in quantitative trait loci (QTL) studies and is also very useful in assembling the genome. It also enables comparative studies between D. magna and D. pulex, for which a linkage map already exists.
resultsHere we describe the first genetic linkage map of D. magna. We generated 214 F2 (intercross) clonal lines as the foundation of the linkage analysis. The linkage map itself is based on 109 microsatellite markers, which produced ten major linkage groups ranging in size from 31.1 cM to 288.5 cM. The total size of this linkage map extends to 1211.6 Kosambi cM, and the average interval for the markers within linkage groups is 15.1 cM. The F2 clones can be used to map QTLs for traits that differ between the parental clones. We successfully mapped the location of two loci with infertility alleles, one inherited from the paternal clone (Iinb1) and the other from the maternal clone (Xinb3).
conclusionsThe D. magna linkage map presented here provides extensive coverage of the genome and a given density of markers that enable us to detect QTLs of moderate to strong effects. It is similar in size to the linkage map of D. pulex.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.