ArticleMolecular biology reports2011
SNPs discovery and CAPS marker conversion in soybean.
Article in Molecular biology reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- Genome-Wide Association Study and Marker Development forInternational journal of molecular sciences · 2024Article
- The elite variations in germplasms for soybean breeding.Molecular breeding : new strategies in plant improvement · 2023Article
- Genetic Diversity and Selection Footprints in the Genome of Brazilian Soybean Cultivars.Frontiers in plant science · 2022Article
- Molecular characterization of SlATG18f in response to Tomato leaf curl New Delhi virus infection in tomato and development of a CAPS marker for leaf curl disease tolerance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Discovery of SNPs in important legumes through comparative genome analysis and conversion of SNPs into PCR-based markers.Journal of genetics · 2021Article
- Identification of favorable SNP alleles and candidate genes responsible for inflorescence-related traits via GWAS in chrysanthemum.Plant molecular biology · 2019Article
- Article
- Transcript Polymorphism Rates in Soybean Seed Tissue Are Increased in a Single Transformant ofInternational journal of plant genomics · 2016Article
- SNP Discovery from Transcriptome of Cashmere Goat Skin.Asian-Australasian journal of animal sciences · 2015Article
- GsSKP21, a Glycine soja S-phase kinase-associated protein, mediates the regulation of plant alkaline tolerance and ABA sensitivity.Plant molecular biology · 2015Article
- CAPS markers using mitochondrial consensus primers for molecular identification of Panax species and Korean ginseng cultivars (Panax ginseng C. A. Meyer).Molecular biology reports · 2012Article
- miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines.PloS one · 2012Article
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Authors and funding
8 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
To discover new SNPs and develop an easy assay method in soybean, we compared the high-throughput pyrosequencing ESTs with whole genome sequences in different soybean varieties and identified 3899 SNPs. Transitions were found to be much more frequent than transversions in these SNPs. We found that SNPs were widely distributed in the soybean genome, targeting numerous genes involved in various physiological and biochemical processes influencing important agronomic traits. A set of 16 SNPs were validated in nine soybean varieties, and seven SNPs were converted into CAPS. From functional gene association analysis, the marker CAPS282 on the 3'-UTR of gene Glyma07g03490 was identified as associated with 100-seed weight in soybean. The SNP discovery and CAPS markers conversion system developed in this study is fast and cost effective, and holds great promise for molecular-assisted breeding of soybean.
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