Evidence map›Paper›PMID 20859243›Full record

ArticlePharmacogenetics and genomics2010

Role of organic cation transporter 3 (SLC22A3) and its missense variants in the pharmacologic action of metformin.

Ligong Chen, Bradley Pawlikowski, Avner Schlessinger, Swati S More, Doug Stryke, Susan J Johns, Michael A Portman, Eugene Chen, Thomas E Ferrin, Andrej Sali and 1 more

Open access · greenAbstract read
In one paragraph

Article in Pharmacogenetics and genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 113 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
113citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

113 citing papers in PubMed, 1 synthesis or guideline pooled it, 205 citations in OpenAlex.

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  16. Connective tissue mast cells store and release noradrenaline.The journal of physiological sciences : JPS · 2023
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53 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Ligong ChenDepartment of Bioengineering and Therapeutic Sciences, University of California at San Francisco, San Francisco, California 94158, USA.
Bradley Pawlikowski
Avner Schlessinger
Swati S More
Doug Stryke
Susan J Johns
Michael A Portman
Eugene Chen
Thomas E Ferrin
Andrej Sali
Kathleen M Giacomini
Bioengineering Center · RUUniversity of California, San Francisco · USCell and Tissue Systems (United States) · US

Funding

PHARMACOGENETICS OF MEMBRANE TRANSPORTERSU01GM061390 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GIACOMINI, KATHLEEN M · 2000 to 2009
$29.2M
SPECIALIZED CENTER FOR THE PROTEIN STRUCTURE INITIATIVEU54GM074929 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2005 to 2009
$16.6M
Pharmacogenomics of Membrane TransportersU19GM061390 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KWOK, PUI-YAN · 2010 to 2014
$16.3M
CELLULAR MECHANISMS OF DRUG ELIMINATIONR01GM036780 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GIACOMINI, KATHLEEN M · 1986 to 2010
$3.0M
Description of substrate specificity determinants in Solute Carrier TransportersF32GM088991 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SCHLESSINGER, AVNER · 2010 to 2011
$104k
NIGMS NIH HHS F32 GM088991NIGMS NIH HHS F32 GM088991-01A1NIGMS NIH HHS GM36780NIGMS NIH HHS GM61390NIGMS NIH HHS GM74929NIGMS NIH HHS R01 GM036780NIGMS NIH HHS U01 GM061390NIGMS NIH HHS U19 GM061390NIGMS NIH HHS U54 GM074929
6 · The paper itself

Abstract

objectivesThe goals of this study were to determine the role of organic cation transporter 3 (OCT3) in the pharmacological action of metformin and to identify and functionally characterize genetic variants of OCT3 with respect to the uptake of metformin and monoamines.

methodsFor pharmacological studies, we evaluated metformin-induced activation of AMP-activated protein kinase, a molecular target of metformin. We used quantitative PCR and immunostaining to localize the transporter and isotopic uptake studies in cells transfected with OCT3 and its nonsynonymous genetic variants for functional analyses.

resultsQuantitative PCR and immunostaining showed that OCT3 was expressed high on the plasma membrane of skeletal muscle and liver, target tissues for metformin action. Both the OCT inhibitor, cimetidine, and OCT3-specific short hairpin RNA significantly reduced the activating effect of metformin on AMP-activated protein kinase. To identify genetic variants in OCT3, we used recent data from the 1000 Genomes and the Pharmacogenomics of Membrane Transporters projects. Six novel missense variants were identified. In functional assays, using various monoamines and metformin, three variants, T44M (c.131C>T), T400I (c.1199C>T) and V423F (c.1267G>T) showed altered substrate specificity. Notably, in cells expressing T400I and V423F, the uptakes of metformin and catecholamines were significantly reduced, but the uptakes of metformin, 1-methyl-4-phenylpyridinium and histamine by T44M were significantly increased more than 50%. Structural modeling suggested that these two variants may be located in the pore lining (T400) or proximal (V423) membrane-spanning helixes.

conclusionOur study suggests that OCT3 plays a role in the therapeutic action of metformin and that genetic variants of OCT3 may modulate metformin and catecholamine action.

Indexed as

Genetic VariationMutation, MissenseAmino Acid SequenceCell LineHypoglycemic AgentsMetforminMolecular Sequence DataOrganic Cation Transporter 3Organic Cation Transport ProteinsRNA, MessengerTransfectionHypoglycemic AgentsMetforminOrganic Cation Transporter 3Organic Cation Transport ProteinsRNA, Messenger

Identifiers

PMID20859243
PMCPMC2976715
OpenAlexW2166354223

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.