Evidence map›Paper›PMID 20858903›Full record

ArticleThe Journal of biological chemistry2010

Nucleophosmin C-terminal leukemia-associated domain interacts with G-rich quadruplex forming DNA.

Luca Federici, Alessandro Arcovito, Giovanni L Scaglione, Flavio Scaloni, Carlo Lo Sterzo, Adele Di Matteo, Brunangelo Falini, Bruno Giardina, Maurizio Brunori

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  8. Article
  9. Review
  10. Nucleophosmin in Its Interaction with Ligands.International journal of molecular sciences · 2020
    Review
  11. Article
  12. Review
  13. Article
  14. Nucleoli in embryos: a central structural platform for embryonic chromatin remodeling?Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2019
    Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 1 country.

Luca FedericiDepartment of Biomedical Sciences, University of Chieti G D'Annunzio, CeSI Center of Excellence on Aging, 66013 Chieti, Italy. lfederici@unich.it
Alessandro Arcovito
Giovanni L Scaglione
Flavio Scaloni
Carlo Lo Sterzo
Adele Di Matteo
Brunangelo Falini
Bruno Giardina
Maurizio Brunori
Sapienza University of Rome · ITUniversità Cattolica del Sacro Cuore · ITInstitute of Chemistry of Molecular Recognition · ITInstitute of Molecular Biology and Pathology · ITIstituto Pasteur · ITUniversity of Chieti-Pescara · ITUniversity of Perugia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nucleophosmin (NPM1) is a nucleocytoplasmic shuttling phosphoprotein, mainly localized at nucleoli, that plays a key role in ribogenesis, centrosome duplication, and response to stress stimuli. Mutations at the C-terminal domain of NPM1 are the most frequent genetic lesion in acute myeloid leukemia and cause the aberrant and stable translocation of the protein in the cytoplasm. The NPM1 C-terminal domain was previously shown to bind nucleic acids. Here we further investigate the DNA binding properties of the NPM1 C-terminal domain both at the protein and nucleic acid levels; we investigate the domain boundaries and identify key residues for high affinity recognition. Furthermore, we demonstrate that the NPM1 C-terminal domain has a preference for G-quadruplex forming DNA regions and induces the formation of G-quadruplex structures in vitro. Finally we show that a specific sequence found at the SOD2 gene promoter, which was previously shown to be a target of NPM1 in vivo, is indeed folded as a G-quadruplex in vitro under physiological conditions. Our data extend considerably present knowledge on the DNA binding properties of NPM1 and suggest a general role in the transcription of genes characterized by the presence of G-quadruplex forming regions at their promoters.

Indexed as

G-QuadruplexesAmino Acid SequenceDNAHumansKineticsLeukemia, Myeloid, AcuteMolecular Sequence DataNuclear ProteinsNucleophosminProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryDNANPM1 protein, humanNuclear ProteinsNucleophosmin

Identifiers

PMID20858903
PMCPMC2988320
OpenAlexW2004015633

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.