Evidence map›Paper›PMID 20858440›Full record

ArticleBiophysical journal2010

Neutron reflectometry study of the conformation of HIV Nef bound to lipid membranes.

Michael S Kent, Jaclyn K Murton, Darryl Y Sasaki, Sushil Satija, Bulent Akgun, Hirsh Nanda, Joseph E Curtis, Jaroslaw Majewski, Christopher R Morgan, John R Engen

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Michael S KentSandia National Laboratories, Albuquerque, New Mexico, USA. mskent@sandia.gov
Jaclyn K Murton
Darryl Y Sasaki
Sushil Satija
Bulent Akgun
Hirsh Nanda
Joseph E Curtis
Jaroslaw Majewski
Christopher R Morgan
John R Engen
National Institute of Standards and Technology · USNortheastern University · USSandia National Laboratories California · USLos Alamos National Laboratory · USSandia National Laboratories · US

Funding

Protein conformational change upon membrane associationR01GM086507 · NIGMS · NORTHEASTERN UNIVERSITY · PI ENGEN, JOHN R · 2009 to 2012
$1.6M
Structural Dynamics of Src-Family Kinase ActivationR01GM070590 · NIGMS · UNIVERSITY OF NEW MEXICO · PI ENGEN, JOHN R · 2004 to 2008
$1.5M
NIGMS NIH HHS R01 GM070590NIGMS NIH HHS R01-GM070590NIGMS NIH HHS R01 GM086507NIGMS NIH HHS R01-GM086507
6 · The paper itself

Abstract

Nef is an HIV-1 accessory protein that directly contributes to AIDS progression. Nef is myristoylated on the N-terminus, associates with membranes, and may undergo a transition from a solution conformation to a membrane-associated conformation. It has been hypothesized that conformational rearrangement enables membrane-associated Nef to interact with cellular proteins. Despite its medical relevance, to our knowledge there is no direct information about the conformation of membrane-bound Nef. In this work, we used neutron reflection to reveal what we believe are the first details of the conformation of membrane-bound Nef. The conformation of Nef was probed upon binding to Langmuir monolayers through the interaction of an N-terminal His tag with a synthetic metal-chelating lipid, which models one of the possible limiting cases for myr-Nef. The data indicate that residues are inserted into the lipid headgroups during interaction, and that the core domain lies directly against the lipid headgroups, with a thickness of ∼40 A. Binding of Nef through the N-terminal His tag apparently facilitates insertion of residues, as no insertion occurred upon binding of Nef through weak electrostatic interactions in the absence of the specific interaction through the His tag.

Indexed as

HIV-1Lipid Metabolism1,2-DipalmitoylphosphatidylcholineAcetic AcidAdsorptionAmino Acid SequenceCell MembraneCopperDeuteriumModels, MolecularMolecular Sequence Datanef Gene Products, Human Immunodeficiency VirusNeutron DiffractionProtein BindingProtein ConformationProtein Transport1,2-DipalmitoylphosphatidylcholineAcetic AcidCopperDeuteriumnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1

Identifiers

PMID20858440
PMCPMC2941035
OpenAlexW1989237673

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.