Evidence map›Paper›PMID 20856248›Full record

ArticleMolecular psychiatry2011

A functional alternative splicing mutation in human tryptophan hydroxylase-2.

X Zhang, P J Nicholls, G Laje, T D Sotnikova, R R Gainetdinov, P R Albert, G Rajkowska, C A Stockmeier, M C Speer, D C Steffens and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. A Novel Alternative Splicing Mechanism That Enhances Human 5-HT1A Receptor RNA Stability Is Altered in Major Depression.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Selective deletion of forebrain glycogen synthase kinase 3β reveals a central role in serotonin-sensitive anxiety and social behaviour.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2012
    Article
  12. Advances in tryptophan hydroxylase-2 gene expression regulation: new insights into serotonin-stress interaction and clinical implications.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2012
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 3 countries.

X ZhangDepartment of Cell Biology, Duke University Medical Center, Durham, NC 27710, USA. xiaodong.zhang@duke-nus.edu.sg
P J Nicholls
G Laje
T D Sotnikova
R R Gainetdinov
P R Albert
G Rajkowska
C A Stockmeier
M C Speer
D C Steffens
M C Austin
F J McMahon
K R R Krishnan
M A Garcia-Blanco
M G Caron
Duke Medical Center · USItalian Institute of Technology · ITJackson Memorial Hospital · USNational Institute of Mental Health · USCenter for Human Genetics · USDuke University · USDuke University Hospital · USUniversity of Mississippi Medical Center · USUniversity of Ottawa · CA

Funding

Identification of Genes Involved in Major Mood DisordersZIAMH002843 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI MCMAHON, FRANCIS J · 2009 to 2025
$24.5M
Recruitment and Assessment Core Patient RecruitmentP50MH060451 · NIMH · DUKE UNIVERSITY · PI MCCARTHY, GREGORY E · 2001 to 2010
$22.3M
VOLTAGE-GATED CA CHANNELS &NMDA RECEPTOR SUBUNITS IN LC OF ALCOHOLICSP20RR017701 · NCRR · UNIVERSITY OF MISSISSIPPI MEDICAL CENTER · PI PAUL, IAN A. · 2002 to 2011
$20.2M
Genetic Determinants of Antidepressant Response in the STAR*D CohortZIAMH002844 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI MCMAHON, FRANCIS J · 2009 to 2025
$11.1M
The 5-HT theory of depression tested in a naturalistic model of 5-HT deficiencyR01MH079201 · NIMH · DUKE UNIVERSITY · PI CARON, MARC G. · 2007 to 2016
$3.7M
Postmortem Human Brain Collection (Supplement to MH67996)R01MH067996 · NIMH · UNIVERSITY OF MISSISSIPPI MEDICAL CENTER · PI STOCKMEIER, CRAIG ALLEN · 2004 to 2007
$1.2M
CIHRIntramural NIH HHSNCRR NIH HHS P20 RR017701NCRR NIH HHS RR017701NIMH NIH HHS MH060451NIMH NIH HHS MH067996NIMH NIH HHS MH079201NIMH NIH HHS P50 MH060451NIMH NIH HHS R01 MH067996NIMH NIH HHS R01 MH079201
6 · The paper itself

Abstract

The brain serotonergic system has an essential role in the physiological functions of the central nervous system and dysregulation of serotonin (5-HT) homeostasis has been implicated in many neuropsychiatric disorders. The tryptophan hydroxylase-2 (TPH2) gene is the rate-limiting enzyme in brain 5-HT synthesis, and thus is an ideal candidate gene for understanding the role of dysregulation of brain serotonergic homeostasis. Here, we characterized a common, but functional single-nucleotide polymorphism (SNP rs1386493) in the TPH2 gene, which decreases efficiency of normal RNA splicing, resulting in a truncated TPH2 protein (TPH2-TR) by alternative splicing. TPH2-TR, which lacks TPH2 enzyme activity, dominant-negatively affects full-length TPH2 function, causing reduced 5-HT production. The predicted mRNA for TPH2-TR is present in postmortem brain of rs1386493 carriers. The rs13864923 variant does not appear to be overrepresented in either global or multiplex depression cohorts. However, in combination with other gene variants linked to 5-HT homeostasis, this variant may exhibit important epistatic influences.

Indexed as

Alternative SplicingAnimalsBrain StemCell Line, TransformedDepressionFemaleGenetic Predisposition to DiseaseGenotypeHumansMalePC12 CellsPedigreePolymorphism, Single NucleotideRatsSerotoninTryptophan HydroxylaseSerotoninTPH2 protein, humanTryptophan Hydroxylase

Identifiers

PMID20856248
PMCPMC3021090
OpenAlexW1978633821

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.