Evidence map›Paper›PMID 20856130›Full record

ArticleJournal of acquired immune deficiency syndromes (1999)2010

Evolution of CCR5 antagonist resistance in an HIV-1 subtype C clinical isolate.

Timothy J Henrich, Athe M N Tsibris, Nicolas R P Lewine, Ioannis Konstantinidis, Kay E Leopold, Manish Sagar, Daniel R Kuritzkes

Open access · greenAbstract read
In one paragraph

Article in Journal of acquired immune deficiency syndromes (1999), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

  1. Trial
  2. Trial
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Drug resistance in HIV-1.Current opinion in virology · 2011
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Timothy J HenrichDivision of Infectious Diseases, Brigham and Women's Hospital, Boston, MA, USA.
Athe M N Tsibris
Nicolas R P Lewine
Ioannis Konstantinidis
Kay E Leopold
Manish Sagar
Daniel R Kuritzkes
Harvard University Press · USHarvard University · USBrigham and Women's Hospital · USMassachusetts General Hospital · US

Funding

The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Multidisciplinary HIV Training ProgramT32AI007387 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Daniel R. Kuritzkes · 1990 to 2026
$8.8M
HIV-1 Resistance to Chemokine Receptor AntagonistsR37AI055357 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI KURITZKES, DANIEL R. · 2007 to 2016
$4.4M
Genotypic and Phenotypic Characterization of Heterosexually Transmitted HIV-1R01AI077473 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI SAGAR, MANISH · 2008 to 2011
$1.4M
HIV-1 THERAPEUTICS AND DRUG RESISTANCEK24RR016482 · NCRR · UNIVERSITY OF COLORADO DENVER · PI KURITZKES, DANIEL R. · 2001 to 2010
$1.0M
Dynamic HIV-1 Escape from CCR5 Antagonism in vitoK08AI081547 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI TSIBRIS, ATHE M. · 2009 to 2011
$409k
NCRR NIH HHS K24 RR016482NIAID NIH HHS AI07387-19NIAID NIH HHS K08 AI081547NIAID NIH HHS P30 AI060354NIAID NIH HHS R01 AI077473NIAID NIH HHS R37 AI055357NIAID NIH HHS R37 AI553537NIAID NIH HHS T32 AI007387
6 · The paper itself

Abstract

objectivesWe previously reported vicriviroc (VCV) resistance in an HIV-infected subject and used deep sequencing and clonal analyses to track the evolution of V3 sequence forms over 28 weeks of therapy. Here, we test the contribution of gp120 mutations to CCR5 antagonist resistance and investigate why certain minority V3 variants emerged as the dominant species under drug pressure.

methodsNineteen site-directed HIV-1 mutants were generated that contained gp120 VCV resistance mutations. Viral sensitivities to VCV, maraviroc, TAK-779, and HGS004 were determined.

resultsThree patterns of susceptibilities were observed as follows: sigmoid inhibition curves with 50% inhibitory concentration similar to pretreatment virus [07J-week 0 (W0)], single mutants with decreased 50% inhibitory concentrations compared with 07J-W0, and mutants that contained ≥5 of 7 VCV resistance mutations with flattened inhibition curves and decreased or negative percent maximal inhibition. Substitutions such as S306P, which sensitized virus to CCR5 antagonists when present as single mutations, were not detected in the baseline virus population but were necessary for maximal resistance when incorporated into V3 backbones that included preexisting VCV resistance mutations.

conclusionsCCR5 antagonist resistance was reproduced only when a majority of V3 mutations were present. Minority V3 loop variants may serve as a scaffold upon which additional mutations lead to complete VCV resistance.

Indexed as

CCR5 Receptor AntagonistsAmidesAmino Acid SequenceAnti-HIV AgentsCyclohexanesDrug Resistance, ViralEvolution, MolecularHIV-1HIV Envelope Protein gp120HIV InfectionsHumansMaravirocMicrobial Sensitivity TestsMolecular Sequence DataMutationPeptide FragmentsAmidesAnti-HIV AgentsCCR5 Receptor AntagonistsCyclohexanesHIV Envelope Protein gp120HIV envelope protein gp120 (305-321)MaravirocPeptide FragmentsPiperazinesPyrimidinesQuaternary Ammonium CompoundsReceptors, CCR5TAK 779Triazolesvicriviroc

Identifiers

PMID20856130
PMCPMC3070184
OpenAlexW2076201978

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.