Evidence map›Paper›PMID 20855601›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

INO80 chromatin remodeling complex promotes the removal of UV lesions by the nucleotide excision repair pathway.

Yingjun Jiang, Xin Wang, Shilai Bao, Ruifeng Guo, David G Johnson, Xuetong Shen, Lei Li

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Epigenetic Regulation of Nucleotide Excision Repair.Frontiers in cell and developmental biology · 2022
    Review
  12. Article
  13. Review
  14. Review
  15. Formation and Recognition of UV-Induced DNA Damage within Genome Complexity.International journal of molecular sciences · 2020
    Review
  16. Review
  17. Article
  18. Article
  19. Chromatin Remodeling and Epigenetic Regulation in Plant DNA Damage Repair.International journal of molecular sciences · 2019
    Review
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 2 countries.

Yingjun JiangDepartment of Experimental Radiation Oncology, University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Xin Wang
Shilai Bao
Ruifeng Guo
David G Johnson
Xuetong Shen
Lei Li
The University of Texas MD Anderson Cancer Center · US

Funding

Recognition and processing of complex lesions by components from multiple DNAP01CA097175 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI NAIRN, RODNEY S · 2004 to 2014
$15.3M
DUAL ROLE OF E2F1 IN TUMORIGENESISR01CA079648 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI JOHNSON, DAVID G. · 1999 to 2014
$4.7M
Post-translational Modification of ActinR01GM093104 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SHEN, XUETONG · 2010 to 2019
$2.8M
ATP-Dependent Chromatin Remodeling and Genomic Instability in Mammalian CellsR01CA127945 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LI, LEI · 2008 to 2013
$1.4M
NCI NIH HHS CA 127945NCI NIH HHS CA97175NCI NIH HHS P01 CA097175NCI NIH HHS R01 CA079648NCI NIH HHS R01 CA127945NIGMS NIH HHS R01 GM093104
6 · The paper itself

Abstract

The creation of accessible DNA in the context of chromatin is a key step in many DNA functions. To reveal how ATP-dependent chromatin remodeling activities impact DNA repair, we constructed mammalian genetic models for the INO80 chromatin remodeling complex and investigated the impact of loss of INO80 function on the repair of UV-induced photo lesions. We showed that deletion of two core components of the INO80 complex, INO80 and ARP5, significantly hampered cellular removal of UV-induced photo lesions but had no significant impact on the transcription of nucleotide excision repair (NER) factors. Loss of INO80 abolished the assembly of NER factors, suggesting that prior chromatin relaxation is important for the NER incision process. Ino80 and Arp5 are enriched to UV-damaged DNA in an NER-incision-independent fashion, suggesting that recruitment of the remodeling activity likely takes place during the initial stage of damage recognition. These results demonstrate a critical role of INO80 in creating DNA accessibility for the NER pathway and provide direct evidence that repair of UV lesions and perhaps most bulky adduct lesions requires chromatin reconfiguration.

Indexed as

Chromatin Assembly and DisassemblyDNADNA DamageDNA RepairGene Knockdown TechniquesProtein SubunitsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUltraviolet RaysDNAINO80 complex, S cerevisiaeProtein SubunitsSaccharomyces cerevisiae Proteins

Identifiers

PMID20855601
PMCPMC2951448
OpenAlexW1974795717

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.